Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6025
         (569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   1.2  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   2.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   6.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.6  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 145 LPISTISRLLNARYLKYRCLSYPCHENPACRLPR*KNTSENQTL*TI 5
           LP   I     ++ L++R   Y C    A  +P   +TSEN+T  TI
Sbjct: 44  LPYVEIIEQPASKALRFR---YECEGRSAGSIPGVNSTSENKTFPTI 87


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 145 LPISTISRLLNARYLKYRCLSYPCHENPACRLPR*KNTSENQTL*TI 5
           LP   I     ++ L++R   Y C    A  +P   +TSEN+T  TI
Sbjct: 44  LPYVEIIEQPASKALRFR---YECEGRSAGSIPGVNSTSENKTFPTI 87


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 150 ENSFNFKQCFFFVNPL 197
           E SF F +C + VNP+
Sbjct: 123 EKSFMFMKCMYEVNPI 138


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 114 FRSRLIVEIGRRENSFNFKQCFFFVNPL 197
           FR  L++    +++SF  +  FF+ +PL
Sbjct: 331 FRYGLLIYDFFKDSSFRIQHHFFYPDPL 358


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 110 KVFEISLPIVSVPRKPCLPTPEIK 39
           K+ ++      +PRKP  P  E+K
Sbjct: 8   KISKVDRSTSPLPRKPVNPVQELK 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,228
Number of Sequences: 438
Number of extensions: 2991
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)