Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6024
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    29   0.84 
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    26   5.9  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   7.9  

>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 427 FLWYKLARKLIEHERQMDRCVTPSTVQINLYD-DNED 320
           FLW+  + K ++ E+++D  VT     ++LY  DNE+
Sbjct: 52  FLWFGFSSKNVKFEQKLDLAVTCLDTIVSLYAVDNEE 88


>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 238 YLDDNIITLYLYLFRIYRIVKE*KTLFYKLLFI 140
           YL  N +  Y+  + +YR  +  KT+FY+  F+
Sbjct: 329 YLLPNSVIQYIERYALYRDAEPVKTIFYQSPFV 361


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 8   ATVWSLKNNLTNFYASNLQSIQVVPFSYNDPP 103
           ATV    N +    AS  Q I V  F+YN+PP
Sbjct: 150 ATVQISGNEIYIASASAFQQIYVWKFNYNNPP 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,795
Number of Sequences: 5004
Number of extensions: 53957
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)