Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6024
         (693 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    25   3.0  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    23   9.1  
AY146757-1|AAO12072.1|  246|Anopheles gambiae odorant-binding pr...    23   9.1  
AJ618928-1|CAF02007.1|  285|Anopheles gambiae odorant-binding pr...    23   9.1  

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -3

Query: 679 CRLLRDNNVEDYLKLTPANYHFTTDQFIC 593
           C+ L  + V+D+ K+ P      T   +C
Sbjct: 134 CQFLPQDRVQDFTKMNPRELLLNTQSSVC 162


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 644 IIFNVVVAQKSAFYT 688
           IIFN+ + +K+ FYT
Sbjct: 229 IIFNITLRRKTLFYT 243


>AY146757-1|AAO12072.1|  246|Anopheles gambiae odorant-binding
           protein AgamOBP39 protein.
          Length = 246

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 59  LQSIQVVPFSYNDPPPP 109
           LQ++    F   DPPPP
Sbjct: 19  LQTVTSATFGARDPPPP 35


>AJ618928-1|CAF02007.1|  285|Anopheles gambiae odorant-binding
           protein OBPjj83a protein.
          Length = 285

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 59  LQSIQVVPFSYNDPPPP 109
           LQ++    F   DPPPP
Sbjct: 19  LQTVTSATFGARDPPPP 35


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 681,682
Number of Sequences: 2352
Number of extensions: 14352
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70250040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)