Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6024
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical pr...    31   0.78 
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF499444-1|AAM27195.1|  945|Caenorhabditis elegans poly ADP-ribo...    29   2.4  
AC024200-15|AAF36011.1|  945|Caenorhabditis elegans Poly(adp-rib...    29   2.4  
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr...    27   9.6  
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase...    27   9.6  
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi...    27   9.6  
AC006607-5|AAF60371.2|  640|Caenorhabditis elegans Hypothetical ...    27   9.6  

>U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical
           protein C31H1.1 protein.
          Length = 693

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +3

Query: 342 FICTVDGVTQRSI*RSCSINFLANLYHKNCLDKKFSNDVNGRFNVTMRTSSGMHLLKNAQ 521
           ++  ++ +++ SI RS   NFL  + H+  L  +    +   FN   R +   HL +  Q
Sbjct: 31  YVKNIENISKESINRSVLNNFLETVVHQKSLPFEILRTMTDHFNYGPRLNFN-HLHQQQQ 89

Query: 522 L---ALPNESKGTKYG 560
           L    +P+E  G K G
Sbjct: 90  LHSTIIPSEYLGDKSG 105


>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical
           protein ZC84.6 protein.
          Length = 1474

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 376 DRCVTPSTVQINLYDDNED-YLNCFDCCIVDCNINDMNRCP 257
           D+ V      + +  DNE  Y+N  D  + +C IN+ N CP
Sbjct: 754 DQSVCCGATDMGVCPDNEKAYINSMDGTVRECLINEHNSCP 794


>AF499444-1|AAM27195.1|  945|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme-1 protein.
          Length = 945

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -3

Query: 577 TNHPMTPYLVPLLSFGKASCAFFNKCIPEDVRIVTLNRPLTSLENFLSKQF----LWYKL 410
           +N P+ PY +     G+++C    K I  D   +++NRP T  +  +   F     W K+
Sbjct: 4   SNEPL-PYAIEYAKSGRSNCKTCKKNIALDQLRMSMNRPSTFFDGNMDSWFHYNCFWIKM 62

Query: 409 AR 404
            R
Sbjct: 63  IR 64


>AC024200-15|AAF36011.1|  945|Caenorhabditis elegans
           Poly(adp-ribose) metabolism enzymeprotein 1 protein.
          Length = 945

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -3

Query: 577 TNHPMTPYLVPLLSFGKASCAFFNKCIPEDVRIVTLNRPLTSLENFLSKQF----LWYKL 410
           +N P+ PY +     G+++C    K I  D   +++NRP T  +  +   F     W K+
Sbjct: 4   SNEPL-PYAIEYAKSGRSNCKTCKKNIALDQLRMSMNRPSTFFDGNMDSWFHYNCFWIKM 62

Query: 409 AR 404
            R
Sbjct: 63  IR 64


>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical protein
            ZK1067.1 protein.
          Length = 1323

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/23 (52%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = -3

Query: 502  CIPED-VRIVTLNRPLTSLENFL 437
            C+ +D ++IVT+ RPL +L+NFL
Sbjct: 953  CMHDDGLKIVTIYRPLGNLQNFL 975


>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
            protein.
          Length = 1323

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/23 (52%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = -3

Query: 502  CIPED-VRIVTLNRPLTSLENFL 437
            C+ +D ++IVT+ RPL +L+NFL
Sbjct: 953  CMHDDGLKIVTIYRPLGNLQNFL 975


>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
            kinase protein.
          Length = 1374

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/23 (52%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = -3

Query: 502  CIPED-VRIVTLNRPLTSLENFL 437
            C+ +D ++IVT+ RPL +L+NFL
Sbjct: 1004 CMHDDGLKIVTIYRPLGNLQNFL 1026


>AC006607-5|AAF60371.2|  640|Caenorhabditis elegans Hypothetical
           protein C09E7.4 protein.
          Length = 640

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 21/71 (29%), Positives = 33/71 (46%)
 Frame = -3

Query: 466 RPLTSLENFLSKQFLWYKLARKLIEHERQMDRCVTPSTVQINLYDDNEDYLNCFDCCIVD 287
           R  +SL +FL  +   Y L+++ I + R +    +       L D +EDYL  +  C   
Sbjct: 255 RNASSLSSFLVSEGKRYSLSKEEIRNIRVVGEGFS------ELKDIDEDYLQYYRLCSQK 308

Query: 286 CNINDMNRCPD 254
              N +NRC D
Sbjct: 309 SIENAVNRCLD 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,886,473
Number of Sequences: 27780
Number of extensions: 309017
Number of successful extensions: 832
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)