Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6022
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    29   0.034
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.8  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 29.5 bits (63), Expect = 0.034
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
 Frame = +1

Query: 472 AKIVAHQAEEIAYPKYEYNYSVADGHSGDNKSQQEVRDGD---VVKGSYSFHEADGSIRT 642
           A I + Q E      Y  N+  ++G S     Q +  D +   V +GS S+   DG   +
Sbjct: 27  AVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVSQGSDSYTAPDGQQVS 86

Query: 643 VEYTADDHSGFNAVVHNTGPTAGP 714
           + Y AD+ +GF  V  +  PTA P
Sbjct: 87  ITYVADE-NGFQ-VQGSHIPTAPP 108


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 688 HNTGPTAGPTH 720
           H  GPT GP H
Sbjct: 341 HTMGPTMGPPH 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.125    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,933
Number of Sequences: 438
Number of extensions: 2748
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)