Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6021
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    27   3.4  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    26   5.9  

>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 336 KKHYTHYHVFDSTHT*KYTLCLLSIGKLLLFFKVCDRIENRLILFVF 476
           ++ Y  Y +F S     Y  CL +  +  +FF    R+   L + VF
Sbjct: 199 RRRYLVYKIFMSLIKSDYYFCLTATVQYAIFFSTISRVGLALTILVF 245


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/49 (22%), Positives = 30/49 (61%)
 Frame = -2

Query: 574 KFKHYYGSIVKHYYNSII*SQYSPKLHYRSIILKTNNINLFSIRSQTLK 428
           +F +Y  + ++  YN II  + S + + +++I+  + +++ ++ + TLK
Sbjct: 40  RFLNYDNNALEAKYNEIITEEVSQEPNQKNVIVGISGLHVVNLPTLTLK 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,990
Number of Sequences: 5004
Number of extensions: 46336
Number of successful extensions: 97
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)