Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6020
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368...    31   1.2  
09_03_0125 - 12531409-12531442,12531577-12531668,12531747-125323...    29   4.7  
05_01_0520 - 4492182-4492780,4496886-4497951                           28   8.3  

>06_01_0510 +
           3681369-3681645,3682825-3682886,3683016-3683165,
           3683776-3683952,3684496-3684711,3684802-3686480,
           3686602-3686667,3686753-3686822,3686909-3687547
          Length = 1111

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 636 HLKIHNKIEFEVTCGVY*CLCSNSNHG 556
           +L + + +E EV   VY  +C+NSNHG
Sbjct: 734 YLSLTHDLEVEVAIEVYRSICANSNHG 760


>09_03_0125 -
           12531409-12531442,12531577-12531668,12531747-12532337,
           12532454-12532789,12532899-12533156,12533867-12533971,
           12534625-12534702,12535464-12535542,12535649-12535723,
           12535828-12535946,12536042-12537106
          Length = 943

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -1

Query: 690 NHLRLCYILDTRFQFVLFHLKIH--NKI-EFEVTCGVY*CLCSNSN 562
           N ++L +  +   Q+  FHLK H   K+ E+   C V+  LCS SN
Sbjct: 785 NEIKLVHTWNDFHQYCDFHLKFHCDEKMDEYNSFCNVFNELCSYSN 830


>05_01_0520 - 4492182-4492780,4496886-4497951
          Length = 554

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
 Frame = -1

Query: 537 RFIHY----HYSK*WIILSRQEPSDKRLDSFTLIDP---TKNIHIFPTINR 406
           R +HY    H ++ W++L     SDKR  ++   DP   + + H+F  + +
Sbjct: 350 REVHYILVNHATRQWVVLPESARSDKRQIAYLGFDPAVSSSHFHVFELVEK 400


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,946,904
Number of Sequences: 37544
Number of extensions: 286064
Number of successful extensions: 493
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)