Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6020
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    24   1.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.9  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   8.6  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   8.6  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   8.6  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   8.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.6  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 193 YVNNFRTANILSYQ 152
           Y+NNF T+N +S+Q
Sbjct: 42  YINNFETSNGISHQ 55


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 453 LIDPTKNIHIFPTINRTFLI 394
           +IDP K +H +PT     L+
Sbjct: 788 IIDPAKAMHHYPTREDNLLV 807


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -3

Query: 187 NNFRTANILSYQHDRSTI*NYFTNQFYDL 101
           NN++ +N  +Y ++     NY   Q+Y++
Sbjct: 87  NNYKYSNYNNYNNNNYNNNNYKKLQYYNI 115


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -3

Query: 187 NNFRTANILSYQHDRSTI*NYFTNQFYDL 101
           NN++ +N  +Y ++     NY   Q+Y++
Sbjct: 87  NNYKYSNYNNYNNNNYNNNNYKKLQYYNI 115


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -3

Query: 187 NNFRTANILSYQHDRSTI*NYFTNQFYDL 101
           NN++ +N  +Y ++     NY   Q+Y++
Sbjct: 87  NNYKYSNYNNYNNNNYNNNNYKKLQYYNI 115


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -3

Query: 187 NNFRTANILSYQHDRSTI*NYFTNQFYDL 101
           NN++ +N  +Y ++     NY   Q+Y++
Sbjct: 87  NNYKYSNYNNYNNNNYNNNNYKKLQYYNI 115


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 392  IMRNVRLIVGKIWIFF 439
            I R   L  GK+W+FF
Sbjct: 991  IKRRPDLEYGKVWLFF 1006


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,939
Number of Sequences: 438
Number of extensions: 3773
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)