Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6017
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23448-8|AAL27226.1|  849|Caenorhabditis elegans Dnaj domain (pr...    29   2.8  
U23448-7|AAM81128.1|  868|Caenorhabditis elegans Dnaj domain (pr...    29   2.8  
U23448-6|AAL27225.1|  915|Caenorhabditis elegans Dnaj domain (pr...    29   2.8  
U23448-5|AAL27227.1|  912|Caenorhabditis elegans Dnaj domain (pr...    29   2.8  
Z81586-1|CAB04690.1|  579|Caenorhabditis elegans Hypothetical pr...    28   6.5  
CU457740-3|CAM36333.1|  367|Caenorhabditis elegans Hypothetical ...    27   8.6  

>U23448-8|AAL27226.1|  849|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform b
           protein.
          Length = 849

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = -1

Query: 286 RMKEPYYVQSRDL*LVSQGG*LWVMGNIYIWWTVTLSTHLSNKKTIPFVRSTFKINKKT- 110
           R +EP ++Q+     V     +W      + WT+ L   +  K    FV     +   T 
Sbjct: 526 RKEEPSWLQNAFSTFVDVLFFVWGYACFGLQWTLLLIVEVCQKIADIFVTFGKSLWAGTC 585

Query: 109 KGLKNFRVTFVYLC 68
           KGL+N  + FVYLC
Sbjct: 586 KGLRNVILAFVYLC 599


>U23448-7|AAM81128.1|  868|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform d
           protein.
          Length = 868

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = -1

Query: 286 RMKEPYYVQSRDL*LVSQGG*LWVMGNIYIWWTVTLSTHLSNKKTIPFVRSTFKINKKT- 110
           R +EP ++Q+     V     +W      + WT+ L   +  K    FV     +   T 
Sbjct: 526 RKEEPSWLQNAFSTFVDVLFFVWGYACFGLQWTLLLIVEVCQKIADIFVTFGKSLWAGTC 585

Query: 109 KGLKNFRVTFVYLC 68
           KGL+N  + FVYLC
Sbjct: 586 KGLRNVILAFVYLC 599


>U23448-6|AAL27225.1|  915|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform a
           protein.
          Length = 915

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = -1

Query: 286 RMKEPYYVQSRDL*LVSQGG*LWVMGNIYIWWTVTLSTHLSNKKTIPFVRSTFKINKKT- 110
           R +EP ++Q+     V     +W      + WT+ L   +  K    FV     +   T 
Sbjct: 526 RKEEPSWLQNAFSTFVDVLFFVWGYACFGLQWTLLLIVEVCQKIADIFVTFGKSLWAGTC 585

Query: 109 KGLKNFRVTFVYLC 68
           KGL+N  + FVYLC
Sbjct: 586 KGLRNVILAFVYLC 599


>U23448-5|AAL27227.1|  912|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform c
           protein.
          Length = 912

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = -1

Query: 286 RMKEPYYVQSRDL*LVSQGG*LWVMGNIYIWWTVTLSTHLSNKKTIPFVRSTFKINKKT- 110
           R +EP ++Q+     V     +W      + WT+ L   +  K    FV     +   T 
Sbjct: 525 RKEEPSWLQNAFSTFVDVLFFVWGYACFGLQWTLLLIVEVCQKIADIFVTFGKSLWAGTC 584

Query: 109 KGLKNFRVTFVYLC 68
           KGL+N  + FVYLC
Sbjct: 585 KGLRNVILAFVYLC 598


>Z81586-1|CAB04690.1|  579|Caenorhabditis elegans Hypothetical
           protein T05F1.2 protein.
          Length = 579

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 289 NLKLITASPHM*TRWWITRASLQNALPSVKIV*KY 393
           NL+++  +P   T WW+ R +    +P V I   Y
Sbjct: 251 NLRIVHNAPGS-THWWLNRINTMRTIPEVTIARNY 284


>CU457740-3|CAM36333.1|  367|Caenorhabditis elegans Hypothetical
           protein C50E10.3 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +3

Query: 51  LLLTLLHKYTKVTRKFFNPFVFLLILNVLRTNGMVFLLLRWVDKVTVHQ 197
           ++L++++  T    KF N  +FL+ +N L    ++FL  RW +   V++
Sbjct: 178 MVLSIVYLLTYNLMKFINVLIFLIAMNFLPM--LIFLGNRWFNLKIVNE 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,360,399
Number of Sequences: 27780
Number of extensions: 304852
Number of successful extensions: 688
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)