Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6016
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69793-3|CAA93672.2|  709|Caenorhabditis elegans Hypothetical pr...    31   0.89 
U39744-1|AAK18882.1|  471|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U80031-2|AAB37612.1|  468|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z69793-3|CAA93672.2|  709|Caenorhabditis elegans Hypothetical
           protein R03A10.3 protein.
          Length = 709

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -3

Query: 189 SPFIDMAFHLRLRQ*IYITRLHISHFFNSDARNYFIIYT*KYNHGTSI 46
           +P    A  ++ +Q +   RL I  +FN+ + +YF++ T    HG  I
Sbjct: 31  NPHSHHATAVKTKQIVNSARLRILQYFNTTSDDYFVVLTNNTTHGLKI 78


>U39744-1|AAK18882.1|  471|Caenorhabditis elegans Hypothetical
           protein C03F11.1 protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -2

Query: 514 AISYHNYYYHTN*LIIKVIDCLTINASDHKILI 416
           A+ YH   YH N ++++++DC    A D ++++
Sbjct: 123 ALLYHIILYHLNDIVLELVDC---GADDWRVVV 152


>U80031-2|AAB37612.1|  468|Caenorhabditis elegans Hypothetical
           protein B0554.5 protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 216 SSVCLCWLVGCCCI 257
           S+V L W VGCCC+
Sbjct: 138 SNVSLSWSVGCCCM 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,438,263
Number of Sequences: 27780
Number of extensions: 224683
Number of successful extensions: 450
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)