Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6014
         (358 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   3.5  
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    25   4.6  
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   4.6  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    25   4.6  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    25   4.6  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    24   6.1  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    24   8.0  
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ...    24   8.0  

>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 231 ISVSFFCICVSYLSFFPLH 287
           I + +F  CV Y+S  PLH
Sbjct: 681 IIMIYFVFCVFYISLIPLH 699


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 117 N*YFNFTYNPKLKFTTRAFIHTLVLKN 197
           N YF F+ +  +KF    FI   +L+N
Sbjct: 272 NIYFGFSLSDAMKFENETFIAKKILEN 298


>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -1

Query: 253 IQKNETEIYIL--FNTAPSVRFFNTNV 179
           IQK+ +EI IL  FN  P  +F N+N+
Sbjct: 36  IQKSFSEISILRVFNKPPIKKFHNSNI 62


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 160 VNFNLGLYVKLKYQFTEGTTLQLFTNDK 77
           V+FN   Y K K + TE    ++F NDK
Sbjct: 6   VSFNRNNYKKRKNERTEPLPRRIFKNDK 33


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 262 ETQIQKNETEIYILFNTAPSVRFFNTNVCMKAL 164
           + +IQ+  +E YILFN    +   NT+  M+ L
Sbjct: 561 DMEIQRRASEFYILFNQVSDI--VNTSDTMEVL 591


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 274 FFRCIWFETQIQKNSRGG 327
           F  C+ +   I KNSRGG
Sbjct: 58  FVNCVCYVPAIDKNSRGG 75


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +3

Query: 39  NTIILNVLSICKILSLVNNCKVVPSVN*YFNFTYNPKLKFT 161
           +T +L +  + ++L   N+ +++P +  Y N   NP +  T
Sbjct: 346 DTCLLKINILSRLLDAQNSSQILPELLYYINSHPNPSVAST 386


>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 539

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 187 TNVCMKALVVNFNLGLYVKLKYQFTEGTTLQLFTNDKILHILK 59
           +N+ M   V  FN G+   L   FT+ T LQL    ++L++L+
Sbjct: 447 SNISMNDAVTYFNHGVTDLLVKPFTKLTLLQLL-KKQLLNLLQ 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,464,352
Number of Sequences: 5004
Number of extensions: 26373
Number of successful extensions: 88
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)