Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6014
         (358 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0243 + 32598782-32598793,32599037-32599123,32601052-326012...    27   3.3  
03_03_0279 - 16134422-16134608,16134703-16134947,16135046-161353...    27   4.3  
05_03_0131 + 8779006-8779073,8779517-8779662,8779739-8780794,878...    26   7.6  
03_04_0144 + 17677975-17678520,17679600-17679632                       26   7.6  
01_05_0249 - 19903154-19903454,19904114-19904168,19904707-199047...    26   7.6  

>03_06_0243 +
           32598782-32598793,32599037-32599123,32601052-32601257,
           32601342-32601453,32601628-32601724,32601815-32601924,
           32601996-32602153,32602559-32602697,32602776-32602892,
           32603084-32603140,32603280-32603351,32603617-32603736,
           32603818-32603983,32604067-32604188,32604373-32604447,
           32604636-32604775,32604860-32604922,32605002-32605065,
           32605161-32605296,32605401-32605474,32605570-32605664,
           32605761-32605792,32606344-32606474,32606595-32606827,
           32606916-32607723,32607815-32607967
          Length = 1192

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 222 SMYISVSFFCICVSYLSFFPLHLV*DTNTKK 314
           S  + +SF C C +YL  + L  V D  T+K
Sbjct: 241 SQLMYLSFLCFCYNYLFVYMLFPVDDNGTRK 271


>03_03_0279 -
           16134422-16134608,16134703-16134947,16135046-16135364,
           16135451-16135675,16135780-16135946,16136030-16136146,
           16136234-16136407,16136489-16136584,16136669-16136885,
           16137005-16137123,16137249-16137441,16137562-16137713,
           16137809-16137938,16138667-16138776
          Length = 816

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -2

Query: 354 LTIGRIGYRAPPRVFLYLCLKPDATEKTTGKRHKYKKMRQKYTYYL 217
           L I + G    PR+ +   L PDAT  T G+R + K +  ++T+ L
Sbjct: 324 LRIKQQGLNITPRILIVTRLLPDATGTTCGQRLE-KVLGTEHTHIL 368


>05_03_0131 +
           8779006-8779073,8779517-8779662,8779739-8780794,
           8781070-8781232,8781423-8781494,8782076-8782147,
           8782643-8782815,8782958-8783163,8783277-8783403,
           8783793-8783864,8783984-8784176,8784298-8784768,
           8785635-8785740
          Length = 974

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 129 NFTYNPKLKFTTRAFIHTLVLKNLTDGAVLNSMYISVSFF 248
           N TY   + FT   FIHT+ + NL     L   Y +V +F
Sbjct: 92  NLTYVADVGFTNTGFIHTVDVGNLQRD--LAQRYTTVRYF 129


>03_04_0144 + 17677975-17678520,17679600-17679632
          Length = 192

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 328 GPPSSFFVFVSQTRCNGKNDR*ETQIQKNETEIYILFNT 212
           GP    F  +  T  N +NDR +  + + ETE  +L N+
Sbjct: 150 GPKFRSFRLIRLTEPNNRNDRNKFDLLRAETEQKLLLNS 188


>01_05_0249 -
           19903154-19903454,19904114-19904168,19904707-19904791,
           19905140-19905511
          Length = 270

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 183 LVLKN-LTDGAVLNSMYIS-VSFFCICVSYLSFFP 281
           LVL N +  G V+NS   +   FFC C  + + FP
Sbjct: 125 LVLSNGIGSGKVINSAAPNKTEFFCSCAGHYTLFP 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,809,892
Number of Sequences: 37544
Number of extensions: 140394
Number of successful extensions: 290
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)