Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6014
(358 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92829-14|CAB07342.2| 337|Caenorhabditis elegans Hypothetical p... 29 1.3
Z74043-8|CAA98538.1| 368|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z74029-2|CAA98432.1| 334|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z71263-4|CAA95822.1| 110|Caenorhabditis elegans Hypothetical pr... 28 2.2
Z81584-9|CAB04680.2| 334|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z81584-2|CAE53738.1| 298|Caenorhabditis elegans Hypothetical pr... 27 5.1
U49941-2|AAB53873.1| 757|Caenorhabditis elegans Hypothetical pr... 27 5.1
AC199170-6|ABO33264.1| 325|Caenorhabditis elegans Hypothetical ... 26 6.7
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 26 8.9
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 26 8.9
Z69793-2|CAA93671.1| 136|Caenorhabditis elegans Hypothetical pr... 26 8.9
U29377-8|AAA68716.1| 218|Caenorhabditis elegans Hypothetical pr... 26 8.9
L12018-4|AAK68342.1| 456|Caenorhabditis elegans Dnaj domain (pr... 26 8.9
L12018-3|AAK68343.1| 446|Caenorhabditis elegans Dnaj domain (pr... 26 8.9
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 26 8.9
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 26 8.9
>Z92829-14|CAB07342.2| 337|Caenorhabditis elegans Hypothetical
protein F10A3.8 protein.
Length = 337
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2
Query: 339 IGYRAPPRVFLYLCLKP 289
IGY APP V LY CL+P
Sbjct: 285 IGYIAPPLVALYPCLEP 301
>Z74043-8|CAA98538.1| 368|Caenorhabditis elegans Hypothetical
protein T19B10.6 protein.
Length = 368
Score = 28.7 bits (61), Expect = 1.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 161 YKSFHTHVSIKKSHRWRC 214
Y SFH V + K H WRC
Sbjct: 130 YHSFHDEVRLYKQHWWRC 147
>Z74029-2|CAA98432.1| 334|Caenorhabditis elegans Hypothetical
protein C45B11.4 protein.
Length = 334
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +3
Query: 132 FTYNPKLKFTTRAFIHTLVLKNLTDGAVLNSMYISVSFFCICVSYLSFFPLHLV*DTNTK 311
F Y+ T F HT + T ++ ++I V+FF +C Y +F + TK
Sbjct: 194 FFYSEIFVLATDDFWHTYLWMFTT--IIVIGIFIQVAFFFLCCLYYIYFSTTITLSPKTK 251
Query: 312 KLE 320
K +
Sbjct: 252 KYQ 254
>Z71263-4|CAA95822.1| 110|Caenorhabditis elegans Hypothetical
protein F52A8.1 protein.
Length = 110
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 18 CETFQN*NTIILNVLSICKILSLVNNC 98
C Q+ T++L L++C ILS++ NC
Sbjct: 77 CFRLQDWVTVLLLFLAVCTILSIIINC 103
>Z81584-9|CAB04680.2| 334|Caenorhabditis elegans Hypothetical
protein T04C12.2a protein.
Length = 334
Score = 26.6 bits (56), Expect = 5.1
Identities = 9/41 (21%), Positives = 22/41 (53%)
Frame = +3
Query: 198 LTDGAVLNSMYISVSFFCICVSYLSFFPLHLV*DTNTKKLE 320
++ G ++ ++ + FF IC Y + ++ +NT+K +
Sbjct: 214 MSTGVIVLMLFSQLGFFTICCIYYLYISTAIMISSNTRKFQ 254
>Z81584-2|CAE53738.1| 298|Caenorhabditis elegans Hypothetical
protein T04C12.2b protein.
Length = 298
Score = 26.6 bits (56), Expect = 5.1
Identities = 9/41 (21%), Positives = 22/41 (53%)
Frame = +3
Query: 198 LTDGAVLNSMYISVSFFCICVSYLSFFPLHLV*DTNTKKLE 320
++ G ++ ++ + FF IC Y + ++ +NT+K +
Sbjct: 178 MSTGVIVLMLFSQLGFFTICCIYYLYISTAIMISSNTRKFQ 218
>U49941-2|AAB53873.1| 757|Caenorhabditis elegans Hypothetical
protein K10B3.6a protein.
Length = 757
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -2
Query: 354 LTIGRIGYRAPPRVFLYLCLKPDATEKTTGKRHKY 250
+ + + A R ++ C +PD T K+HKY
Sbjct: 587 IILAEVAEHAGNRRIIFSCFEPDICTMITKKQHKY 621
>AC199170-6|ABO33264.1| 325|Caenorhabditis elegans Hypothetical
protein T08D2.5 protein.
Length = 325
Score = 26.2 bits (55), Expect = 6.7
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = -1
Query: 262 ETQIQKNETEIYILFNTAPSVRFFNTNVCMKALVVNFNLGLYVKLKYQFTEGTTLQLFTN 83
E IQ++E +I+ + PS+ +C ++ + N + ++Y QL N
Sbjct: 13 ECTIQQHEYDIHTFIDQEPSIHPDAFTICSTCVLKDHNTTHHTVIEY-LPIRLNYQLRMN 71
Query: 82 DKILHILKT 56
K +LKT
Sbjct: 72 TKSADVLKT 80
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 247 KNETEIYILFNTAPSVRFFNTNVCMKALVVNFNLGLYVKL 128
K++T IY T+P+ +FN + K ++ L L KL
Sbjct: 1643 KDDTVIYTSEETSPNSVYFNVPIEKKDYTTSYGLKLTFKL 1682
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 247 KNETEIYILFNTAPSVRFFNTNVCMKALVVNFNLGLYVKL 128
K++T IY T+P+ +FN + K ++ L L KL
Sbjct: 1643 KDDTVIYTSEETSPNSVYFNVPIEKKDYTTSYGLKLTFKL 1682
>Z69793-2|CAA93671.1| 136|Caenorhabditis elegans Hypothetical
protein R03A10.2 protein.
Length = 136
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 201 TDGAVLNSMYISVSFFCICVSYLSFF 278
TD L Y S C+CV + +FF
Sbjct: 48 TDDVFLGESYGSADPICVCVFFFNFF 73
>U29377-8|AAA68716.1| 218|Caenorhabditis elegans Hypothetical
protein K05F1.9 protein.
Length = 218
Score = 25.8 bits (54), Expect = 8.9
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -1
Query: 250 QKNETEIYILFNTAPSVRFFNTNVCMKALVVNFNLGLYVKLKYQF-TEGTTLQLF 89
+ ETE++IL +V F N + + + + NL K +Y F + T+ QLF
Sbjct: 10 ESKETEVFILKLENTTVTFTNPKLGDEVTIASLNLTNPTKDRYAFKIKCTSNQLF 64
>L12018-4|AAK68342.1| 456|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 10, isoform a
protein.
Length = 456
Score = 25.8 bits (54), Expect = 8.9
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -1
Query: 280 GKNDR*ETQIQKNETEIYILFNTAPSVRF 194
G N+ + Q + ++++ FN APS++F
Sbjct: 267 GTNNGDSLKFQVGKNQLFVRFNVAPSLKF 295
>L12018-3|AAK68343.1| 446|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 10, isoform b
protein.
Length = 446
Score = 25.8 bits (54), Expect = 8.9
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -1
Query: 280 GKNDR*ETQIQKNETEIYILFNTAPSVRF 194
G N+ + Q + ++++ FN APS++F
Sbjct: 267 GTNNGDSLKFQVGKNQLFVRFNVAPSLKF 295
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 247 KNETEIYILFNTAPSVRFFNTNVCMKALVVNFNLGLYVKL 128
K++T IY T+P+ +FN + K ++ L L KL
Sbjct: 1643 KDDTVIYTSEETSPNSVYFNVPIEKKDYTTSYGLKLTFKL 1682
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 247 KNETEIYILFNTAPSVRFFNTNVCMKALVVNFNLGLYVKL 128
K++T IY T+P+ +FN + K ++ L L KL
Sbjct: 1643 KDDTVIYTSEETSPNSVYFNVPIEKKDYTTSYGLKLTFKL 1682
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,162,525
Number of Sequences: 27780
Number of extensions: 147932
Number of successful extensions: 415
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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