Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6014
         (358 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.1  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   5.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   5.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   5.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   7.6  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 186 VLKNLTDGAVLNSMYISVSFFCICVSYLSFFPLH 287
           VL      A   S +I  + +  CV +L+F PL+
Sbjct: 835 VLTRKIPEAFNESKHIGFTMYTTCVIWLAFVPLY 868


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 57  VLSICKILSLVNNCKVV 107
           + S+  I+SLV NC V+
Sbjct: 63  IYSMLLIMSLVGNCCVI 79


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 12/54 (22%), Positives = 22/54 (40%)
 Frame = +3

Query: 123 YFNFTYNPKLKFTTRAFIHTLVLKNLTDGAVLNSMYISVSFFCICVSYLSFFPL 284
           YF   + P +   T +FI   +  N     V+  +   ++FF     + S  P+
Sbjct: 303 YFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPV 356


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 12/54 (22%), Positives = 22/54 (40%)
 Frame = +3

Query: 123 YFNFTYNPKLKFTTRAFIHTLVLKNLTDGAVLNSMYISVSFFCICVSYLSFFPL 284
           YF   + P +   T +FI   +  N     V+  +   ++FF     + S  P+
Sbjct: 272 YFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPV 325


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 12/54 (22%), Positives = 22/54 (40%)
 Frame = +3

Query: 123 YFNFTYNPKLKFTTRAFIHTLVLKNLTDGAVLNSMYISVSFFCICVSYLSFFPL 284
           YF   + P +   T +FI   +  N     V+  +   ++FF     + S  P+
Sbjct: 323 YFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPV 376


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 12/54 (22%), Positives = 22/54 (40%)
 Frame = +3

Query: 123 YFNFTYNPKLKFTTRAFIHTLVLKNLTDGAVLNSMYISVSFFCICVSYLSFFPL 284
           YF   + P +   T +FI   +  N     V+  +   ++FF     + S  P+
Sbjct: 272 YFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPV 325


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 57  VLSICKILSLVNNCKVV 107
           + S+  I+SLV NC V+
Sbjct: 63  IYSMLLIMSLVGNCCVI 79


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 225 YYLIQRHL*DFLI 187
           Y+ +QRH+ +FLI
Sbjct: 206 YFHLQRHMGNFLI 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,220
Number of Sequences: 438
Number of extensions: 1882
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)