Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6013
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0110 - 17357323-17357403,17357487-17357595,17357737-173579... 188 3e-48
12_02_0723 - 22532379-22532902,22533060-22533135,22533195-225333... 29 2.2
11_06_0595 - 25368114-25370051 29 2.9
11_04_0166 + 14317129-14317962,14318042-14318809,14319008-143197... 29 2.9
08_02_0838 - 21662721-21662759,21672016-21673355,21673566-21674505 29 2.9
04_01_0129 + 1408408-1409055,1409107-1410013,1410145-1410294,141... 29 2.9
07_03_0375 + 17408815-17409035,17422820-17423477,17423780-174241... 29 3.8
11_06_0236 + 21597601-21598415,21599223-21601152,21601361-21601510 27 8.7
05_03_0268 - 11318114-11318420,11318567-11318885,11318999-11319119 27 8.7
03_05_0328 - 23170019-23170168,23170865-23170903,23171043-231711... 27 8.7
>03_04_0110 -
17357323-17357403,17357487-17357595,17357737-17357906,
17358503-17358649,17358767-17358925,17359410-17359469,
17359659-17359705,17359786-17359888,17362640-17363080
Length = 438
Score = 188 bits (458), Expect = 3e-48
Identities = 83/155 (53%), Positives = 116/155 (74%)
Frame = +1
Query: 139 LHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTLQTDEVKNVPCGTSGGV 318
LH+V EGHVGVY+RGGALL + GFH+ +P +T ++ IQ V+N+PCGT GGV
Sbjct: 157 LHQVPEGHVGVYWRGGALLETITPPGFHVKLPWITQFEPIQ-------VRNIPCGTKGGV 209
Query: 319 LIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHHELNQFCSAHTLHEVYIDLFD 498
+I F++IEVVN+L + V + + N+ YD+T I++K+HHE+NQFCSAH+L +VYIDLFD
Sbjct: 210 MISFDKIEVVNRLHKEFVHETLLNYGVHYDKTWIYDKIHHEINQFCSAHSLQQVYIDLFD 269
Query: 499 QIDENLRTALQKDLHEMAPGLRVQAVRVTKPKIPE 603
QIDE ++ A+Q+D APG+ + +VRVTKP IP+
Sbjct: 270 QIDETMKEAIQRDCTRYAPGIEIISVRVTKPNIPD 304
>12_02_0723 -
22532379-22532902,22533060-22533135,22533195-22533380,
22533459-22534323,22534740-22534918,22535168-22535542
Length = 734
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 421 FNKVHHELNQFCSAHTLHEVYIDLFDQIDENLR 519
F KV + N+F + H +H V D+ DQ+ + L+
Sbjct: 96 FKKVTNLFNKFKTNHQIHGVMKDIMDQVKKELK 128
>11_06_0595 - 25368114-25370051
Length = 645
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 477 LVQGMGTTELIQFMVHFIENKSPV 406
+ +G GT E+I+F V FIE+ P+
Sbjct: 327 IAKGYGTEEVIEFCVEFIEDLRPI 350
>11_04_0166 +
14317129-14317962,14318042-14318809,14319008-14319740,
14353399-14353892,14353971-14354417,14354505-14355110,
14355204-14355391,14355470-14355640,14355723-14355810
Length = 1442
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 477 LVQGMGTTELIQFMVHFIENKSPV 406
+ +G GT E+I+F V FIE+ P+
Sbjct: 614 IAKGYGTEEVIEFCVEFIEDLRPI 637
>08_02_0838 - 21662721-21662759,21672016-21673355,21673566-21674505
Length = 772
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 477 LVQGMGTTELIQFMVHFIENKSPV 406
+ +G GT E+I+F V FIE+ P+
Sbjct: 713 IAKGYGTEEVIEFCVEFIEDLRPI 736
>04_01_0129 +
1408408-1409055,1409107-1410013,1410145-1410294,
1419174-1419634,1419683-1419999,1420114-1420477
Length = 948
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 477 LVQGMGTTELIQFMVHFIENKSPV 406
+ +G GT E+I+F V FIE+ P+
Sbjct: 675 IAKGYGTEEVIEFCVEFIEDLRPI 698
>07_03_0375 +
17408815-17409035,17422820-17423477,17423780-17424161,
17424236-17424550,17424727-17425118,17432479-17432508
Length = 665
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 477 LVQGMGTTELIQFMVHFIENKSPV 406
+ +G GT E+I+F + FIE+ P+
Sbjct: 632 IAKGCGTEEVIEFCIEFIEDLRPI 655
>11_06_0236 + 21597601-21598415,21599223-21601152,21601361-21601510
Length = 964
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +1
Query: 370 VLDMVRNFTAEYDRTLIFNKVHHELNQFCSAHTLHEVYIDLFDQID--ENLRTALQK 534
VLD++R E + + +K+ E N + + T+H V + D NL T++++
Sbjct: 496 VLDLIRLLAIEENFVKVLDKMREEHNSYAQSTTVHRVALHKSWNQDNKNNLATSMEQ 552
>05_03_0268 - 11318114-11318420,11318567-11318885,11318999-11319119
Length = 248
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Frame = +1
Query: 217 FHMMIPLLTSYKAIQTTLQTDEVKNVPCGTSGGVLI------YFERIEVVN 351
F M P TS Q + K VPC SGG+ YFE + V N
Sbjct: 123 FDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTISGRDYFELVTVFN 173
>03_05_0328 -
23170019-23170168,23170865-23170903,23171043-23171141,
23171214-23171342,23171915-23172061,23172959-23173089,
23173938-23174157,23174294-23174387,23174469-23174581,
23174727-23174861,23175231-23175335,23175440-23175544,
23176240-23176327,23176415-23176536,23176611-23176670,
23177434-23177529,23177620-23177772,23177865-23177951,
23179179-23179246,23179603-23179726,23180235-23180330,
23180430-23180539,23180647-23180761,23181622-23181699,
23181843-23181908,23182203-23182363,23182781-23183099
Length = 1069
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 501 LIKQINVYLVQGMGTTELIQFMVHFIENKS 412
L+K I++Y + TT L++FM F+ NK+
Sbjct: 753 LLKAISLYADEPEVTTPLLKFMCEFVLNKA 782
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,879,142
Number of Sequences: 37544
Number of extensions: 318527
Number of successful extensions: 679
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -