Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6013
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-16|CAM36358.1|  312|Caenorhabditis elegans Hypothetical...   250   8e-67
U29378-3|AAA68723.2|  330|Caenorhabditis elegans Stomatin protei...    38   0.007
U29378-2|ABS19471.1|  325|Caenorhabditis elegans Stomatin protei...    38   0.007
AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protei...    31   0.84 
U80836-9|AAB37895.1|  303|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81509-7|CAJ85751.1|  544|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>CU457741-16|CAM36358.1|  312|Caenorhabditis elegans Hypothetical
           protein C42C1.15 protein.
          Length = 312

 Score =  250 bits (611), Expect = 8e-67
 Identities = 116/171 (67%), Positives = 139/171 (81%), Gaps = 1/171 (0%)
 Frame = +1

Query: 94  LAIVILAVGVTVHF-SLHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTL 270
           LA+ + A+ + +   +LHK+EEGHVGVYYRGGALL   +  G+HM IP LT+ K++Q TL
Sbjct: 5   LALGLFALWIAIFSQALHKIEEGHVGVYYRGGALLKAVTNPGYHMHIPFLTTVKSVQVTL 64

Query: 271 QTDEVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHHELNQ 450
           QTDE  NVPCGTSGGVLIYF+RIEVVN L   SV  +V+N+T +YDR LIFNKVHHE+NQ
Sbjct: 65  QTDEATNVPCGTSGGVLIYFDRIEVVNFLSQDSVYAIVKNYTVDYDRPLIFNKVHHEVNQ 124

Query: 451 FCSAHTLHEVYIDLFDQIDENLRTALQKDLHEMAPGLRVQAVRVTKPKIPE 603
           FCS HTL EVYIDLFD+IDE ++ ALQ+DL +MAPGL VQAVRVTKPKIPE
Sbjct: 125 FCSVHTLQEVYIDLFDKIDEEIKNALQEDLVKMAPGLYVQAVRVTKPKIPE 175


>U29378-3|AAA68723.2|  330|Caenorhabditis elegans Stomatin protein
           1, isoform a protein.
          Length = 330

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 35/167 (20%), Positives = 71/167 (42%)
 Frame = +1

Query: 100 IVILAVGVTVHFSLHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTLQTD 279
           ++ L   V+V   +  V+E    V +R G L+P     G   +IP + ++  I   + + 
Sbjct: 51  LIFLTFPVSVFMCIKIVQEYQRAVVFRLGRLVPDVKGPGIFFIIPCIDTFLNIDLRVASY 110

Query: 280 EVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHHELNQFCS 459
            V +    +   V +  + +      DP + +  V N T   D T +  +    L     
Sbjct: 111 NVPSQEILSRDSVTVSVDAVVYFKVFDPITSVVGVGNAT---DSTKLLAQT--TLRTILG 165

Query: 460 AHTLHEVYIDLFDQIDENLRTALQKDLHEMAPGLRVQAVRVTKPKIP 600
            HTL E+  D  ++I  +++ +L +       G++V+ V +   ++P
Sbjct: 166 THTLSEILSDR-EKISADMKISLDEATEPW--GIKVERVELRDVRLP 209


>U29378-2|ABS19471.1|  325|Caenorhabditis elegans Stomatin protein
           1, isoform b protein.
          Length = 325

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 35/167 (20%), Positives = 71/167 (42%)
 Frame = +1

Query: 100 IVILAVGVTVHFSLHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTLQTD 279
           ++ L   V+V   +  V+E    V +R G L+P     G   +IP + ++  I   + + 
Sbjct: 51  LIFLTFPVSVFMCIKIVQEYQRAVVFRLGRLVPDVKGPGIFFIIPCIDTFLNIDLRVASY 110

Query: 280 EVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHHELNQFCS 459
            V +    +   V +  + +      DP + +  V N T   D T +  +    L     
Sbjct: 111 NVPSQEILSRDSVTVSVDAVVYFKVFDPITSVVGVGNAT---DSTKLLAQT--TLRTILG 165

Query: 460 AHTLHEVYIDLFDQIDENLRTALQKDLHEMAPGLRVQAVRVTKPKIP 600
            HTL E+  D  ++I  +++ +L +       G++V+ V +   ++P
Sbjct: 166 THTLSEILSDR-EKISADMKISLDEATEPW--GIKVERVELRDVRLP 209


>AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protein 4
           protein.
          Length = 741

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +1

Query: 358 DPQSVLDMVRNFTAEYDRTLIFNKVHHELNQFCSAHTLHEVYIDLFDQIDENLRTALQKD 537
           DP  +  ++R F ++Y+R   F+    +L  F  A T H+V  D    I ++  TA ++ 
Sbjct: 43  DPSDMFVIIRFFVSDYERFRKFDMGPTKLASF-MAKTFHDVRADYVSTISKDASTAARQL 101

Query: 538 LHEMAPGLRVQ 570
             +++   R +
Sbjct: 102 AEKISEEYRTE 112


>U80836-9|AAB37895.1|  303|Caenorhabditis elegans Hypothetical
           protein B0432.10 protein.
          Length = 303

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/62 (22%), Positives = 31/62 (50%)
 Frame = +1

Query: 331 ERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHHELNQFCSAHTLHEVYIDLFDQIDE 510
           +++ + N+     +++++   TA+YD  ++     H L Q    + +H+    L   I+E
Sbjct: 164 QQLSLANETMENRMIEVLMEATAKYDDIVVIRHSFHRLIQLAQTYRMHK----LMRVIEE 219

Query: 511 NL 516
           NL
Sbjct: 220 NL 221


>Z81509-7|CAJ85751.1|  544|Caenorhabditis elegans Hypothetical
           protein F21A3.2b protein.
          Length = 544

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 195 TSYKSSWFSHDDTTSNIIQSHSD 263
           TSY  +W ++DDT  +I++  +D
Sbjct: 107 TSYSITWMTYDDTLKSIVEYGTD 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,155,673
Number of Sequences: 27780
Number of extensions: 300499
Number of successful extensions: 577
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)