Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6011
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1573 + 27956351-27956409,27956411-27956630,27957000-279571... 192 3e-49
08_02_1568 + 27922338-27922342,27922839-27923058,27923369-279235... 191 5e-49
02_02_0678 + 12868735-12868739,12869576-12869795,12870280-128704... 190 7e-49
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 188 4e-48
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 43 2e-04
05_03_0678 - 16871481-16871620,16871836-16871881,16872170-168722... 33 0.16
05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405... 29 3.5
09_02_0251 - 6282420-6282526,6282642-6283104,6283223-6283289,628... 29 4.6
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020... 29 4.6
03_02_0221 + 6533643-6533687,6533860-6533955,6535323-6535682,653... 28 8.1
>08_02_1573 +
27956351-27956409,27956411-27956630,27957000-27957150,
27957602-27957807,27957967-27958020
Length = 229
Score = 192 bits (467), Expect = 3e-49
Identities = 94/186 (50%), Positives = 125/186 (67%)
Frame = -2
Query: 691 KVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM 512
K+ + L E ++ V+ SK+K R F ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPKM
Sbjct: 21 KLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKM 80
Query: 511 QVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPRL 332
+VC+LGD QH +EA+ + + M ASE++IKQIPRL
Sbjct: 81 KVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRL 140
Query: 331 LGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNV 152
LGP GKFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG++ M ++ QN+
Sbjct: 141 LGP-----GKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQNI 195
Query: 151 HLSINF 134
+S+NF
Sbjct: 196 QMSVNF 201
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/29 (72%), Positives = 26/29 (89%)
Frame = -3
Query: 135 FLVSLLKKHWQNVRSLHMKSTMGPPQRLY 49
FLVSLLKK+WQNVR L++KSTMG P R++
Sbjct: 201 FLVSLLKKNWQNVRCLYIKSTMGKPIRVF 229
>08_02_1568 +
27922338-27922342,27922839-27923058,27923369-27923519,
27923874-27924079,27924211-27924264
Length = 211
Score = 191 bits (465), Expect = 5e-49
Identities = 93/186 (50%), Positives = 124/186 (66%)
Frame = -2
Query: 691 KVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM 512
K+ + L E ++ V+ K+K R F ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPKM
Sbjct: 3 KLQTEALKEAISQVVADCKEKNRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKM 62
Query: 511 QVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPRL 332
+VC+LGD QH +EA+ + + M ASE++IKQIPRL
Sbjct: 63 KVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRL 122
Query: 331 LGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNV 152
LGP GKFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG++ M ++ QN+
Sbjct: 123 LGP-----GKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQNI 177
Query: 151 HLSINF 134
+S+NF
Sbjct: 178 QMSVNF 183
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/29 (72%), Positives = 26/29 (89%)
Frame = -3
Query: 135 FLVSLLKKHWQNVRSLHMKSTMGPPQRLY 49
FLVSLLKK+WQNVR L++KSTMG P R++
Sbjct: 183 FLVSLLKKNWQNVRCLYIKSTMGKPYRVF 211
>02_02_0678 +
12868735-12868739,12869576-12869795,12870280-12870430,
12870853-12871058,12871166-12871219
Length = 211
Score = 190 bits (464), Expect = 7e-49
Identities = 92/186 (49%), Positives = 125/186 (67%)
Frame = -2
Query: 691 KVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM 512
K+ D L E ++ + S++K+R F+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK+
Sbjct: 3 KLQSDALREAISQIANDSREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKL 62
Query: 511 QVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPRL 332
+VC+LGD QH +EA+ + + M ASE++IKQIPRL
Sbjct: 63 KVCMLGDAQHVEEAEKMGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRL 122
Query: 331 LGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNV 152
LGP GKFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG+ M ++ QNV
Sbjct: 123 LGP-----GKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNCAMEEKQIFQNV 177
Query: 151 HLSINF 134
+S+NF
Sbjct: 178 QMSVNF 183
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = -3
Query: 135 FLVSLLKKHWQNVRSLHMKSTMGPPQRLY 49
FLVSLLKK+WQNVR L++KSTMG R++
Sbjct: 183 FLVSLLKKNWQNVRCLYLKSTMGKVYRVF 211
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 188 bits (458), Expect = 4e-48
Identities = 98/208 (47%), Positives = 130/208 (62%), Gaps = 22/208 (10%)
Frame = -2
Query: 691 KVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM 512
K+ D L E ++ + S++K+R F+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPKM
Sbjct: 3 KLQSDALREAISQITSESREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKM 62
Query: 511 QVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPRL 332
+VC+LGD QH +EA+ + + M ASE++IKQIPRL
Sbjct: 63 KVCMLGDAQHVEEAEKMGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRL 122
Query: 331 LGPGLNKA----------------------GKFPGLLSHQESMTQKIDEVKGTIKFQMKK 218
LGPGLNKA GKFP L++HQES+ K++E K T+KFQ+KK
Sbjct: 123 LGPGLNKAGKILLVYGRSILKSSYIIVSKRGKFPTLVTHQESLESKVNETKATVKFQLKK 182
Query: 217 VLCLSVAVGHVDMTPDELAQNVHLSINF 134
VLC+ VAVG+ M ++ QNV +S+NF
Sbjct: 183 VLCMGVAVGNCAMEEKQIFQNVQMSVNF 210
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = -3
Query: 135 FLVSLLKKHWQNVRSLHMKSTMGPPQRLY 49
FLVSLLKK+WQNVR L++KSTMG R++
Sbjct: 210 FLVSLLKKNWQNVRCLYLKSTMGKVIRVF 238
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 43.2 bits (97), Expect = 2e-04
Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 2/166 (1%)
Frame = -2
Query: 643 SSKDKKRNFLETVELQIGLKNYDPQK-DKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAK 467
S+ +KKRNF ETVE + L DP++ D+ G + L + ++V V + DEA+
Sbjct: 279 SANEKKRNFTETVEAHVML-GVDPRRGDQMVRGALTLPHGTGKTVRVAVFAEGPAADEAR 337
Query: 466 TLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPRLLGP-GLNKAGKFPGL 290
+ L K + R+LGP GL K G
Sbjct: 338 AAGADVVGGDELIEEIRTGGGKLSFDKCIATPMYMPRLSK-VARILGPRGLMPNPKL-GS 395
Query: 289 LSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNV 152
+++ S K + G + F++ K + V +G ++ + + L +N+
Sbjct: 396 VTNDVSGAVKAAK-SGRVDFKIDKTAIVHVGLGKINFSDENLRENI 440
>05_03_0678 -
16871481-16871620,16871836-16871881,16872170-16872243,
16872495-16872552,16872640-16872702,16872891-16873012,
16873132-16873247,16873367-16873428,16873497-16873589,
16874061-16874138,16874248-16874423,16874500-16874550,
16874964-16875078
Length = 397
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = -2
Query: 676 TLYECVNAVLQSSKDKK-RNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM-QVC 503
T +E + + LQS K K R +E + D + K + +K + PK +VC
Sbjct: 256 TRWEQLKSTLQSGKHKGLRRCIEEIVFSYTYPRLDMEVSKHMNHLLKAPFCIHPKTGRVC 315
Query: 502 VLGDQQHCDEAKTLNVPCM 446
V D +CD+ VP +
Sbjct: 316 VPIDPNNCDDFDPTTVPTL 334
>05_07_0079 -
27539389-27539892,27540059-27540343,27540453-27540550,
27540951-27541042,27541155-27541259,27541360-27541567,
27542469-27542472,27542742-27542765,27545025-27546266
Length = 853
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/74 (18%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = -2
Query: 358 SLIKQIPRLLGPGLNKAGKFPGLLSHQES-MTQKIDEVKGTIKFQMKKVLCLSVAVGHVD 182
+++ +PR+LG K P + + +++ +V + ++ C + VG +D
Sbjct: 145 AVLPLLPRVLGKAFYSTKKAPVAVDFARTGWLEQVRKVMNSTFLYLRTGTCSGIKVGRLD 204
Query: 181 MTPDELAQNVHLSI 140
M ++ +NV ++
Sbjct: 205 MKEEDTVENVMAAV 218
>09_02_0251 -
6282420-6282526,6282642-6283104,6283223-6283289,
6283536-6283808,6284096-6284907,6285402-6285479,
6285586-6285636,6285737-6285817,6285903-6285982,
6288481-6288652
Length = 727
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 217 PSSFGT*WFP*LHQSSASWTPGGREDQGIYQLCSNR 324
P F WFP +H ++ S R Q I+ +C N+
Sbjct: 493 PVYFKNDWFPFIHSTTLSEGTNARRRQDIFGVCCNK 528
>03_02_0829 -
11599665-11600364,11600853-11601076,11601786-11602000,
11602300-11602377,11602593-11603907
Length = 843
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 544 QCRRNACPSVGHSSSDQFEALQSPKS 621
Q RN PS+ H +SD F + SP S
Sbjct: 81 QKSRNLSPSISHQASDSFSPVPSPLS 106
>03_02_0221 +
6533643-6533687,6533860-6533955,6535323-6535682,
6537106-6537177,6537374-6537697
Length = 298
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 511 AFSAAVCILALQCRRNACPSVGH 579
A A VCI L+CR+ CP H
Sbjct: 110 ASRAEVCIFCLRCRQVLCPRCSH 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,759,044
Number of Sequences: 37544
Number of extensions: 397920
Number of successful extensions: 1077
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -