Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6011
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   225   2e-59
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...   186   1e-47
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...   140   7e-34
Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical pr...    33   0.19 
AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    28   5.5  
AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian el...    27   9.6  

>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  225 bits (550), Expect = 2e-59
 Identities = 108/186 (58%), Positives = 132/186 (70%)
 Frame = -2

Query: 691 KVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM 512
           KVSR++L E +  VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP M
Sbjct: 3   KVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPNM 62

Query: 511 QVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPRL 332
           +VCV GDQ H DEA   ++P M                          ASESLIKQIPR+
Sbjct: 63  KVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPRI 122

Query: 331 LGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNV 152
           LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +EL  N+
Sbjct: 123 LGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSNI 182

Query: 151 HLSINF 134
            LSINF
Sbjct: 183 SLSINF 188



 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 24/29 (82%), Positives = 28/29 (96%)
 Frame = -3

Query: 135 FLVSLLKKHWQNVRSLHMKSTMGPPQRLY 49
           FLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 188 FLVSLLKKNWQNVRSLNIKSTMGKPQRVY 216


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score =  186 bits (453), Expect = 1e-47
 Identities = 88/151 (58%), Positives = 106/151 (70%)
 Frame = -2

Query: 586 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXX 407
           KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA   ++P M             
Sbjct: 8   KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKK 67

Query: 406 XXXXXXXXXXXXXASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 227
                        ASESLIKQIPR+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQ
Sbjct: 68  LIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQ 127

Query: 226 MKKVLCLSVAVGHVDMTPDELAQNVHLSINF 134
           MKKVLCLSVAVGHV +T +EL  N+ LSINF
Sbjct: 128 MKKVLCLSVAVGHVGLTQEELVSNISLSINF 158



 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 24/29 (82%), Positives = 28/29 (96%)
 Frame = -3

Query: 135 FLVSLLKKHWQNVRSLHMKSTMGPPQRLY 49
           FLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 158 FLVSLLKKNWQNVRSLNIKSTMGKPQRVY 186


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score =  140 bits (340), Expect = 7e-34
 Identities = 69/127 (54%), Positives = 83/127 (65%)
 Frame = -2

Query: 514 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPR 335
           M+VCV GDQ H DEA   ++P M                          ASESLIKQIPR
Sbjct: 1   MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60

Query: 334 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 155
           +LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +EL  N
Sbjct: 61  ILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSN 120

Query: 154 VHLSINF 134
           + LSINF
Sbjct: 121 ISLSINF 127



 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 24/29 (82%), Positives = 28/29 (96%)
 Frame = -3

Query: 135 FLVSLLKKHWQNVRSLHMKSTMGPPQRLY 49
           FLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 127 FLVSLLKKNWQNVRSLNIKSTMGKPQRVY 155


>Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical
           protein R10E8.3 protein.
          Length = 522

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = +2

Query: 119 SSDTRKVDGKMHILSKLIRSHVHMANCYRKTQHLLHLELNGS--LDFINLLRHGLLVGEK 292
           S +T   D + + L K+    + + + +R    + HLEL GS  L+FI LL    L  +K
Sbjct: 322 SFETFHCDFERYTLEKMQNLGIFLGS-FRNKISMAHLELKGSSELEFIQLL--DCLDAKK 378

Query: 293 TREFTSFVQTGTQQTGN 343
            R+ T F   G    GN
Sbjct: 379 LRKLTIFATVGDVNNGN 395


>AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical
           protein E02H9.4 protein.
          Length = 118

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 637 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 527
           K +K N  E VEL   +KNY P+ + R    V+ KY+
Sbjct: 41  KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
           lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -1

Query: 161 SECASFHQLSLCHCSRNTGR-MSDHCI*NQ-RWDHPRDCTN 45
           ++CA+F   S C C+ N  R  S  CI ++ R +H +DC +
Sbjct: 38  NDCANFADESNCTCNENEFRCQSGACIPSKARCNHMQDCND 78


>AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian
           elks/cast/erc/rab6 interactingprotein homolog protein 1
           protein.
          Length = 836

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 352 IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 233
           I +IP   G GLN A ++  L    ++M +K+++   +IK
Sbjct: 142 ISRIPTGTGSGLNIAREYEQLKVEYDTMMEKLNQTMNSIK 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,165,872
Number of Sequences: 27780
Number of extensions: 354780
Number of successful extensions: 865
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)