Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6009
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch...    27   1.8  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   3.2  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   4.2  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.4  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    25   9.8  

>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 394 GCELVHPSKQ*IKKHISAAFIQALTSLYIYTACFTM 501
           G  L  P K    K  +AAF+  L + Y+ TACF M
Sbjct: 125 GVLLHRPWKLFSLKPFTAAFVLLLAASYLATACFRM 160


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 412 GGRAHSPPSVKWLLKPIDIHN 350
           GG  H P +V WLL+P DI++
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 257 RQHSTYCQHSTETLTILK 310
           RQ STYCQ   ET+ +LK
Sbjct: 783 RQASTYCQLGNETIFMLK 800


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 403 AHSPPSVKWLLKPIDIHNVNA 341
           A  PPS+K    P+DI N++A
Sbjct: 224 ASQPPSIKTDASPVDIKNMDA 244


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = -3

Query: 206 YVRYLPSAYLFLP*STNTFRFEG-DGSLCTLIFLFIALVGRRVYGPPDGKWLRSLVNVSN 30
           Y R L  A+  +P    TF     DG+L   I +F        Y  P+G+ L+ +V   N
Sbjct: 329 YSRLLLFAHQCIPSREITFETTSKDGNLLNAIRIFCLYFDLDYYARPNGEVLKLVVTHPN 388

Query: 29  ARSRWVFAS 3
            ++  V  S
Sbjct: 389 KKNTSVSQS 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,496
Number of Sequences: 5004
Number of extensions: 57520
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)