Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6008
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-13|CAM36354.1|  608|Caenorhabditis elegans Hypothetical...    36   0.036
CU457741-11|CAM36352.1|  609|Caenorhabditis elegans Hypothetical...    36   0.036
AF068201-1|AAC70927.1|  609|Caenorhabditis elegans aminopeptidas...    36   0.036
AF068200-1|AAC72891.1|  609|Caenorhabditis elegans aminopeptidas...    36   0.036
Z92809-1|CAB07270.1|  286|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z66497-3|CAE48503.1|  363|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z66497-1|CAA91283.1|  521|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog...    27   9.6  
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro...    27   9.6  

>CU457741-13|CAM36354.1|  608|Caenorhabditis elegans Hypothetical
           protein C42C1.11c protein.
          Length = 608

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -3

Query: 497 IKDVNSTNTSDNQLIKLVSRLAEADRETATSSIPYHTMTGAL*TIPQKI 351
           ++ VN     D++  KLV  L  AD + A SS+PY   +  L TI Q +
Sbjct: 352 VRTVNDVFGPDHEYTKLVQNLGNADPDDAFSSVPYEKGSALLFTIEQAL 400


>CU457741-11|CAM36352.1|  609|Caenorhabditis elegans Hypothetical
           protein C42C1.11a protein.
          Length = 609

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -3

Query: 497 IKDVNSTNTSDNQLIKLVSRLAEADRETATSSIPYHTMTGAL*TIPQKI 351
           ++ VN     D++  KLV  L  AD + A SS+PY   +  L TI Q +
Sbjct: 353 VRTVNDVFGPDHEYTKLVQNLGNADPDDAFSSVPYEKGSALLFTIEQAL 401


>AF068201-1|AAC70927.1|  609|Caenorhabditis elegans aminopeptidase-1
           protein.
          Length = 609

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -3

Query: 497 IKDVNSTNTSDNQLIKLVSRLAEADRETATSSIPYHTMTGAL*TIPQKI 351
           ++ VN     D++  KLV  L  AD + A SS+PY   +  L TI Q +
Sbjct: 353 VRTVNDVFGPDHEYTKLVQNLGNADPDDAFSSVPYEKGSALLFTIEQAL 401


>AF068200-1|AAC72891.1|  609|Caenorhabditis elegans aminopeptidase-1
           protein.
          Length = 609

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -3

Query: 497 IKDVNSTNTSDNQLIKLVSRLAEADRETATSSIPYHTMTGAL*TIPQKI 351
           ++ VN     D++  KLV  L  AD + A SS+PY   +  L TI Q +
Sbjct: 353 VRTVNDVFGPDHEYTKLVQNLGNADPDDAFSSVPYEKGSALLFTIEQAL 401


>Z92809-1|CAB07270.1|  286|Caenorhabditis elegans Hypothetical
           protein R17.1 protein.
          Length = 286

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +3

Query: 132 SGSICSFVRHTCINGRNITLGMSVSLCGEDLLLLDVSII---SMLPTNDNVIF 281
           S  +  F   TC N +NI +    S+  EDLL+ ++S I   ++LP  D  +F
Sbjct: 151 SPRVQDFQAVTCCNFKNIMIKQDESIKLEDLLVSNISEILMHTLLPLTDICLF 203


>Z66497-3|CAE48503.1|  363|Caenorhabditis elegans Hypothetical
           protein K08F8.1c protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -2

Query: 423 SRNRNKFHPVPHNDWCVVNNSTEDH---LTTTSIKNRLSIKNRM 301
           SR  N ++  PH +W  V+  T+D    L  T+  +RL+I   M
Sbjct: 199 SRIANAYYAFPHEEWDCVSKDTKDDIRCLLRTNPSDRLTIHELM 242


>Z66497-1|CAA91283.1|  521|Caenorhabditis elegans Hypothetical
           protein K08F8.1a protein.
          Length = 521

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -2

Query: 423 SRNRNKFHPVPHNDWCVVNNSTEDH---LTTTSIKNRLSIKNRM 301
           SR  N ++  PH +W  V+  T+D    L  T+  +RL+I   M
Sbjct: 357 SRIANAYYAFPHEEWDCVSKDTKDDIRCLLRTNPSDRLTIHELM 400


>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
           domain protein 1 protein.
          Length = 1346

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 530 KNISPPGMFKNIKDVNSTNTSDNQLIKLVSRLAEADRET 414
           + ++PP     I+D  S N+  + L K  +R AEA+R T
Sbjct: 662 EKVAPPPPRAKIEDTGSGNSFADMLQKRAARSAEANRGT 700


>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
           protein.
          Length = 1346

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 530 KNISPPGMFKNIKDVNSTNTSDNQLIKLVSRLAEADRET 414
           + ++PP     I+D  S N+  + L K  +R AEA+R T
Sbjct: 662 EKVAPPPPRAKIEDTGSGNSFADMLQKRAARSAEANRGT 700


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,877,718
Number of Sequences: 27780
Number of extensions: 317051
Number of successful extensions: 707
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)