Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6008
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.7  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   4.8  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   8.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 450  ARVPARRGGSRNRNKFHP 397
            +RVP++ GGS   N F P
Sbjct: 1788 SRVPSQGGGSGTHNVFSP 1805


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 553 FVSGLIWSDRNDVSSEVFKYL 615
           F+   +W+D   V  EVF+YL
Sbjct: 36  FLDNSVWADGLLVFYEVFRYL 56


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = +1

Query: 124 QVHLDRYAHSYVI---RVSMGATLLSACPY 204
           ++H D     +V+    + +G T + ACPY
Sbjct: 132 RIHADSCDRLWVLDTGTIGIGNTTIQACPY 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,369
Number of Sequences: 438
Number of extensions: 4145
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)