Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6006
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    29   0.87 
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   6.1  

>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -2

Query: 645 HHKAKYFILNIH*FIKYVYMYLRRYPNICTYLTTFWNVQIIRKITYFL*YYM 490
           HH    FIL +      +  + RRY  +CT    F  +++I  I Y +  Y+
Sbjct: 73  HHGVISFILGLLGIFLLMPRFERRYGTLCTIAMFFGFLEVIPAIAYLIACYV 124


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 402 LSDLHSNPLYCQKGKFKSKVF*TKSNGISPYNIIENMLFYVLF 530
           +SD+H + +   +   KSK    +S  I  YN   N   YVLF
Sbjct: 817 MSDIHPDDV---ENHSKSKFLGEESKNIIGYNFFGNATMYVLF 856


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,122
Number of Sequences: 5004
Number of extensions: 66352
Number of successful extensions: 131
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)