Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6006
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81100-1|CAB03194.1|  331|Caenorhabditis elegans Hypothetical pr...    32   0.35 
AF068717-4|AAC17764.2|  357|Caenorhabditis elegans Serpentine re...    29   4.4  
Z72509-2|CAA96646.1|  520|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z93785-5|CAB07861.3|  321|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AF067950-2|AAG24155.2|  365|Caenorhabditis elegans Serpentine re...    28   7.6  
AC006832-7|AAF39999.1|  505|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z81100-1|CAB03194.1|  331|Caenorhabditis elegans Hypothetical
           protein K08G2.7 protein.
          Length = 331

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = -2

Query: 696 FLMVFYIFSNTEKAKISHHKAKYFILNIH*FIKYVYMYLRRYPNICTYLTTFWNVQIIRK 517
           FL VF++    EK    +H   YF++ +          L  +P I  Y  T+W +Q++  
Sbjct: 45  FLAVFHLNKEKEKETAVYHIIYYFVVTVKRMYALQLFQLTIFPAI-AYFETYW-IQVVIL 102

Query: 516 ITY 508
           I Y
Sbjct: 103 IMY 105


>AF068717-4|AAC17764.2|  357|Caenorhabditis elegans Serpentine
           receptor, class w protein144 protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 229 IKIIYSVILPRFVFPLVTSRLIFEL 155
           I  I S I+P F+FP+VT  L+ EL
Sbjct: 223 INAIVSTIIPCFIFPIVTVFLVKEL 247


>Z72509-2|CAA96646.1|  520|Caenorhabditis elegans Hypothetical
           protein F32G8.2 protein.
          Length = 520

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = -2

Query: 276 MLCSIKYQIKLYPSL 232
           MLCS+K Q+K++PSL
Sbjct: 1   MLCSLKNQVKIFPSL 15


>Z93785-5|CAB07861.3|  321|Caenorhabditis elegans Hypothetical
           protein W09D10.5 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +2

Query: 536 FQNVVR*VHILGYLRRYIYTYFMN*CMFKIKYLALWC---DIFAFSVLENM*KTIRNY 700
           FQN     H+   L  + +TY++    F  K  A W    D   + ++ N+  T+RN+
Sbjct: 111 FQNNYTMYHVDSSLNHFYWTYYLYAMEFSSKVPAQWTFLGDDQTYLIVPNLRNTLRNF 168


>AF067950-2|AAG24155.2|  365|Caenorhabditis elegans Serpentine
           receptor, class w protein143 protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 229 IKIIYSVILPRFVFPLVTSRLIFEL 155
           I  + S I+P F+FP+VT  L+ EL
Sbjct: 223 INSVVSTIIPCFIFPIVTVFLVKEL 247


>AC006832-7|AAF39999.1|  505|Caenorhabditis elegans Hypothetical
           protein ZK355.5 protein.
          Length = 505

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 370 YMCFVI*NREFYQIYIQILCIAKKASLSLRFSEPKAMESH 489
           +M F + + +FY    +I+ + KK   S + SEP  + +H
Sbjct: 10  FMNFQLISTDFYMDIQEIMSVEKKCKKSKQLSEPNCLFNH 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,342,318
Number of Sequences: 27780
Number of extensions: 353944
Number of successful extensions: 737
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)