Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6005
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    26   6.5  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    26   6.5  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    25   8.6  

>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 141 STIGSETRPTEKIRREIQWAVSIH 212
           STIG   R  ++ RR  QWA +IH
Sbjct: 604 STIGQVRRQLQQGRRLYQWARNIH 627


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = +1

Query: 430 RFCRHTIKTAQI*LHRVTSKISFVCNGIYLISNVIKHLT*KLILQRY*KFHLF 588
           R  R  I   Q   HR  SKI  V  G+Y +      L   + L+   KF+LF
Sbjct: 309 RVLREVISQGQPRTHRPYSKILVVIEGLYSMEGNFCDLPKVVELKNRYKFYLF 361


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 554 NFYVKCLMTFEIK*IPLHTN 495
           N+  KCLM   +K  P+HTN
Sbjct: 271 NYVNKCLMAKALKDYPVHTN 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,875
Number of Sequences: 5004
Number of extensions: 48846
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)