Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6000
         (737 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0RV96 Cluster: Possible transposase; n=1; Rhodococcus ...    35   2.4  
UniRef50_Q75ET4 Cluster: AAL010Wp; n=1; Eremothecium gossypii|Re...    34   3.2  
UniRef50_UPI0000E80928 Cluster: PREDICTED: hypothetical protein;...    33   5.5  
UniRef50_UPI0000E48E4E Cluster: PREDICTED: similar to ENSANGP000...    33   9.7  
UniRef50_A3VE99 Cluster: Putative transferase; n=1; Rhodobactera...    33   9.7  

>UniRef50_Q0RV96 Cluster: Possible transposase; n=1; Rhodococcus sp.
           RHA1|Rep: Possible transposase - Rhodococcus sp. (strain
           RHA1)
          Length = 799

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 20/67 (29%), Positives = 38/67 (56%)
 Frame = +1

Query: 199 DYGLI*RTSFRSYKLCSGAWNYQPNMESRTSTIYLAYTAHRVHRALGISLSNFIKRHSFI 378
           D+  + R  FR+Y LC+ +   +P   S  S +  A+ + R+ + L +S+++F+K    +
Sbjct: 57  DFADVPRARFRAYGLCAVSQCERP-WTSMNSGLCEAHRSQRI-KTLKVSMADFLKHPKVV 114

Query: 379 RRRSFTS 399
            R+SF S
Sbjct: 115 ARKSFGS 121


>UniRef50_Q75ET4 Cluster: AAL010Wp; n=1; Eremothecium gossypii|Rep:
           AAL010Wp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 834

 Score = 34.3 bits (75), Expect = 3.2
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +1

Query: 499 QSNQLLHQRPSRHQPQHPCRHLH 567
           Q  QLLHQ PS+H  QH  +HLH
Sbjct: 189 QVQQLLHQAPSQHPHQHQNQHLH 211


>UniRef50_UPI0000E80928 Cluster: PREDICTED: hypothetical protein;
           n=1; Gallus gallus|Rep: PREDICTED: hypothetical protein
           - Gallus gallus
          Length = 383

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 32/93 (34%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
 Frame = -3

Query: 534 PGRALVQELVGLP---ARRAGLQSQRRQ*TLHHDPTERTSAQT---VQAADAGKTAASDK 373
           P  ALVQE+ GLP     RAG  +QRR  T H  P    SA +   + A  AG+TA    
Sbjct: 192 PMPALVQEMAGLPQPCRARAGPATQRRA-TAHPQPARPRSALSSARMPACPAGRTALLGA 250

Query: 372 TVAFDKIAEADSQSSMHSVRRIR*INRTGSGLH 274
             A  ++  A          R R     G G H
Sbjct: 251 PPAAGRVRWAAGPGRAWDGGRHRAPGGVGPGAH 283


>UniRef50_UPI0000E48E4E Cluster: PREDICTED: similar to
           ENSANGP00000005397; n=4; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to ENSANGP00000005397
           - Strongylocentrotus purpuratus
          Length = 1719

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = +2

Query: 320 ECIELWESASAILSNAT--VLSDAAVLPASAAWTVW--AEVRSVGS*CSVH*RRCDCNPA 487
           E I++  S+  I  N T  V  + +  P + A  VW  ++V SVG  C ++   C+ NP 
Sbjct: 768 ENIQIIHSSEGISKNYTHKVPVEQSDTPEAIAEGVWIVSKVPSVGLQCEINIDECESNPC 827

Query: 488 LRAG 499
           LR G
Sbjct: 828 LRGG 831


>UniRef50_A3VE99 Cluster: Putative transferase; n=1; Rhodobacterales
           bacterium HTCC2654|Rep: Putative transferase -
           Rhodobacterales bacterium HTCC2654
          Length = 404

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -3

Query: 162 RTIVEIAPVLSSC-NRTYMDHW-GRYCAEHP-SADCILRHCREQSTTQE 25
           RT++    +  +C N  YMD+  G+ C   P S DCI  HC ++S  Q+
Sbjct: 113 RTLIHAHDMFVACPNGVYMDYQKGQVCTRVPLSLDCISTHCDKRSYPQK 161


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 704,787,336
Number of Sequences: 1657284
Number of extensions: 13687682
Number of successful extensions: 42004
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41897
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60088620670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)