Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6000
         (737 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   1.9  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   1.9  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    23   3.4  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   4.5  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    22   5.9  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   7.9  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   7.9  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    21   7.9  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    21   7.9  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 505 NQLLHQRPSRHQPQHPCRHL 564
           + +  Q P  HQP H  +H+
Sbjct: 169 HHMQEQHPQHHQPHHQQQHM 188


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 505 NQLLHQRPSRHQPQHPCRHL 564
           + +  Q P  HQP H  +H+
Sbjct: 171 HHMQEQHPQHHQPHHQQQHM 190


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 611 IRVAS*IIL*RNNTILSCDVIILVFFKTLLNSTKRRHK 724
           I + S I L     I+ CD +     K + N+ K RHK
Sbjct: 240 ISLVSLIFLFNCTLIIMCDCVRSEASKVVKNAQKLRHK 277


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 325 HRALGISLSNFIKRHSFIRRRSFTSVRSLDSLGRGSL 435
           +  +G  +SN I+        +  S  S+ +LGRG L
Sbjct: 76  YTTIGSPISNRIRHEMATPMATMNSYGSVGTLGRGDL 112


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 340 FPKLDALGAPYTLDKSYWFGTPYLVGNSMRPNIVCKNGNLFVK 212
           F KLD LGA    ++       +L+G S+  N+      LF+K
Sbjct: 117 FLKLDQLGATVRNNRQIRRMVVFLIGVSLSFNLFGDLLTLFIK 159


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 503 PTSSCTSALPGTSPSTRA 556
           PT+S +SAL   +P++R+
Sbjct: 220 PTTSSSSALESPNPASRS 237


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory
          receptor candidate 36 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 13 MRPLLLCCALFSAVP 57
          +RP+   C LF+ VP
Sbjct: 11 LRPIFAVCRLFALVP 25


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 503 PTSSCTSALPGTSPSTRA 556
           PT+S +SAL   +P++R+
Sbjct: 9   PTTSSSSALESPNPASRS 26


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 503 PTSSCTSALPGTSPSTRA 556
           PT+S +SAL   +P++R+
Sbjct: 9   PTTSSSSALESPNPASRS 26


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,610
Number of Sequences: 336
Number of extensions: 3444
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)