Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6000
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0519 - 10150954-10152006                                         29   2.9  
05_04_0234 + 19282196-19282818,19282948-19283347                       29   3.9  
11_05_0058 + 18719852-18719929,18720032-18720889,18720969-187211...    29   5.1  
02_05_1137 - 34372803-34372869,34373088-34373229,34373334-343734...    29   5.1  
03_01_0299 - 2323945-2324422,2324542-2324671,2324763-2324898           28   8.9  

>09_02_0519 - 10150954-10152006
          Length = 350

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +2

Query: 227 SVLTNYVRAHG-ITNQIWSPEPVRFI*RIRRTECIELWESASAILSNATV 373
           S+L  + R HG  T  +WS + +R + R+  T+ + LW++A+   ++ T+
Sbjct: 53  SILDLHGRLHGDSTTTVWS-KGIRSVGRVLHTQPVLLWDNATGAAASFTM 101


>05_04_0234 + 19282196-19282818,19282948-19283347
          Length = 340

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -2

Query: 472 TASSVNATSRPDGANLCPNCPGCGRW*NCG 383
           TA+         G   CPNC  C RW  CG
Sbjct: 28  TAARAEQCGAQAGGARCPNCLCCSRWGWCG 57


>11_05_0058 +
           18719852-18719929,18720032-18720889,18720969-18721118,
           18722248-18722496,18722531-18722575,18722576-18722638
          Length = 480

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 256 WNYQPNMESRTSTIYLAYTAHRV-HRALGISLSNFIKRH 369
           W + PN+E  T  + L    H+V  RA  +S  N + RH
Sbjct: 55  WRFYPNLEFTTKALGLKKRIHKVQRRAKFVSCVNTVIRH 93


>02_05_1137 -
           34372803-34372869,34373088-34373229,34373334-34373403,
           34373521-34373823,34374215-34374280,34374425-34374490,
           34374584-34374682,34376153-34376310,34376951-34377039,
           34377209-34377591
          Length = 480

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 551 GCWGWCREGRWCRSW 507
           G  G  R+GRWCRSW
Sbjct: 33  GVAGGRRQGRWCRSW 47


>03_01_0299 - 2323945-2324422,2324542-2324671,2324763-2324898
          Length = 247

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = +1

Query: 484 RPSCRQSNQLLHQRPSRHQPQHPCRHLHLTLNL 582
           RPS R   QLLHQ   + Q QH  ++LH +LNL
Sbjct: 117 RPSRRARAQLLHQYQLQQQQQHR-QYLH-SLNL 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,948,851
Number of Sequences: 37544
Number of extensions: 374487
Number of successful extensions: 1131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)