Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6000
         (737 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK022105-1|BAB13962.1|  442|Homo sapiens protein ( Homo sapiens ...    33   1.1  
BC050538-1|AAH50538.1|  442|Homo sapiens radical S-adenosyl meth...    30   10.0 
BC005854-1|AAH05854.4|  387|Homo sapiens RSAD1 protein protein.        30   10.0 
AL137724-1|CAB70894.1|  439|Homo sapiens hypothetical protein pr...    30   10.0 
AK002026-1|BAA92043.1|  442|Homo sapiens protein ( Homo sapiens ...    30   10.0 
AC078834-1|AAS01989.1|  439|Homo sapiens unknown protein.              30   10.0 

>AK022105-1|BAB13962.1|  442|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12043 fis, clone HEMBB1001950, weakly similar to
           PROBABLE OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III
           OXIDASE (EC ).
          Length = 442

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -3

Query: 567 VKVTARVLGLVPGRALVQELVGLPARRAGLQSQRRQ*TLHH 445
           ++  A   GL PGR  V  ++GLPA++ G    + Q  LHH
Sbjct: 178 LRTLAEARGLFPGRVSVDLMLGLPAQQVGPWLGQLQELLHH 218


>BC050538-1|AAH50538.1|  442|Homo sapiens radical S-adenosyl
           methionine domain containing 1 protein.
          Length = 442

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 567 VKVTARVLGLVPGRALVQELVGLPARRAGLQSQRRQ*TLHH 445
           ++  A    L PGR  V  ++GLPA++ G    + Q  LHH
Sbjct: 178 LRTLAEARRLFPGRVSVDLMLGLPAQQVGPWLGQLQELLHH 218


>BC005854-1|AAH05854.4|  387|Homo sapiens RSAD1 protein protein.
          Length = 387

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 567 VKVTARVLGLVPGRALVQELVGLPARRAGLQSQRRQ*TLHH 445
           ++  A    L PGR  V  ++GLPA++ G    + Q  LHH
Sbjct: 123 LRTLAEARRLFPGRVSVDLMLGLPAQQVGPWLGQLQELLHH 163


>AL137724-1|CAB70894.1|  439|Homo sapiens hypothetical protein
           protein.
          Length = 439

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 517 HQRPSRHQPQHPCRHLH 567
           HQ P +H PQHP +H H
Sbjct: 63  HQPPPQHPPQHPPQHQH 79


>AK002026-1|BAA92043.1|  442|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11164 fis, clone PLACE1007226, weakly similar to
           PROBABLE OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III
           OXIDASE (EC ).
          Length = 442

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 567 VKVTARVLGLVPGRALVQELVGLPARRAGLQSQRRQ*TLHH 445
           ++  A    L PGR  V  ++GLPA++ G    + Q  LHH
Sbjct: 178 LRTLAEARRLFPGRVSVDLMLGLPAQQVGPWLGQLQELLHH 218


>AC078834-1|AAS01989.1|  439|Homo sapiens unknown protein.
          Length = 439

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 517 HQRPSRHQPQHPCRHLH 567
           HQ P +H PQHP +H H
Sbjct: 63  HQPPPQHPPQHPPQHQH 79


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,594,724
Number of Sequences: 237096
Number of extensions: 2055993
Number of successful extensions: 5076
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5076
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)