Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6000
(737 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin pr... 30 1.5
Z99273-1|CAB16477.1| 645|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z82256-4|CAB05118.1| 636|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z48621-6|CAA88544.1| 238|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z99709-12|CAI79146.1| 349|Caenorhabditis elegans Hypothetical p... 28 6.0
Z99709-11|CAB16861.1| 347|Caenorhabditis elegans Hypothetical p... 28 6.0
Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical p... 28 6.0
U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p... 28 6.0
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 28 7.9
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 28 7.9
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 28 7.9
>X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin
protein.
Length = 1651
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 174 LDCPRTIVEIAPVLSSCNRTYMDHWGRYCAEH 79
L+ P T+ I VL CN ++ R+ AEH
Sbjct: 368 LEAPHTVARIVKVLRECNEEQLEQIYRHVAEH 399
>Z99273-1|CAB16477.1| 645|Caenorhabditis elegans Hypothetical
protein Y45F10C.1 protein.
Length = 645
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 161 LGQSRI*SSRRVWTMVSFNEQVSVLTNYVRAHGITNQIWSPEPVRFI 301
LG ++ +R+W SF+EQ+ + + R + I SPE VRF+
Sbjct: 213 LGIVQLDDKKRIWKFTSFDEQLKLQGRHGRC---SVDIESPEFVRFV 256
>Z82256-4|CAB05118.1| 636|Caenorhabditis elegans Hypothetical
protein B0513.6 protein.
Length = 636
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 161 LGQSRI*SSRRVWTMVSFNEQVSVLTNYVRAHGITNQIWSPEPVRFI 301
LG ++ +R+W SF+EQ+ + + R + I SPE VRF+
Sbjct: 213 LGIVQLDDKKRIWKFTSFDEQLKLQGRHGRC---SVDIESPEFVRFV 256
>Z48621-6|CAA88544.1| 238|Caenorhabditis elegans Hypothetical
protein R07B1.7 protein.
Length = 238
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 506 TSSCTSALPGTSPSTRAVTFT*PSTWLSIQQTTIQI 613
T +C + PGT+P+T A T T S+QQ I +
Sbjct: 157 THACVATSPGTAPTTAAPTGCQACTLDSVQQIMISL 192
>Z99709-12|CAI79146.1| 349|Caenorhabditis elegans Hypothetical
protein C47B2.6b protein.
Length = 349
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 234 LQTMFGRMELPTKYGVPNQYDLSSVYGAPS 323
L+ + GR ++P K GVP D++SVY PS
Sbjct: 287 LKKVSGR-DIPVKIGVPRPGDVASVYCDPS 315
>Z99709-11|CAB16861.1| 347|Caenorhabditis elegans Hypothetical
protein C47B2.6a protein.
Length = 347
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 234 LQTMFGRMELPTKYGVPNQYDLSSVYGAPS 323
L+ + GR ++P K GVP D++SVY PS
Sbjct: 285 LKKVSGR-DIPVKIGVPRPGDVASVYCDPS 313
>Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical
protein Y69H2.10b protein.
Length = 975
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -2
Query: 91 LCGASLCRLYPTALPRTKHNTRATD 17
+CG CR T LP T H TD
Sbjct: 630 ICGEPPCRSMATCLPTTNHTVNITD 654
>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
protein C34D4.14 protein.
Length = 2761
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 432 RTSAQTVQAADAGKTAASDKTVAFDKIAEADSQ 334
+ SA+T ADA +T + DKTV D E D +
Sbjct: 1844 QASAETDGDADADETNSEDKTVGADDAMEEDDE 1876
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 479 NPALRAGNPTSSCTSALPGTSPSTRAVTFT*PSTWLSIQQTT 604
NP PT+ P T+P+ VT T P+T S TT
Sbjct: 655 NPTSSTTAPTAPVNPTSPTTAPTVPPVTTTTPTTTTSTTTTT 696
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 479 NPALRAGNPTSSCTSALPGTSPSTRAVTFT*PSTWLSIQQTT 604
NP PT+ P T+P+ VT T P+T S TT
Sbjct: 711 NPTSSTTAPTAPVNPTSPTTAPTVPPVTTTTPTTTTSTTTTT 752
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 479 NPALRAGNPTSSCTSALPGTSPSTRAVTFT*PSTWLSIQQTT 604
NP PT+ P T+P+ VT T P+T S TT
Sbjct: 534 NPTSSTTAPTAPVNPTSPTTAPTVPPVTTTTPTTTTSTTTTT 575
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,086,637
Number of Sequences: 27780
Number of extensions: 322742
Number of successful extensions: 1036
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -