Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5998
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...   177   6e-46
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac...   176   1e-45
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19...    52   3e-08
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    28   0.58 
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    27   1.0  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   3.1  
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom...    25   3.1  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   5.4  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   5.4  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    24   7.1  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    24   9.4  
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    24   9.4  

>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score =  177 bits (430), Expect = 6e-46
 Identities = 82/123 (66%), Positives = 94/123 (76%)
 Frame = +2

Query: 14  LNKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 193
           L KKR FR F YRGV+L+QLLD+  EQL++L H         GL       ++KLR+AK 
Sbjct: 15  LRKKRTFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKS 74

Query: 194 EAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKP 373
           EAP NEKP  VKTHLRNMII+PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP
Sbjct: 75  EAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKP 134

Query: 374 VKH 382
            KH
Sbjct: 135 TKH 137


>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 153

 Score =  176 bits (428), Expect = 1e-45
 Identities = 82/123 (66%), Positives = 94/123 (76%)
 Frame = +2

Query: 14  LNKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 193
           L KKR FR F YRGV+L+QLLD+  EQL++L H         GL       ++KLR+AK 
Sbjct: 14  LRKKRSFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKT 73

Query: 194 EAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKP 373
           EAP NEKP  VKTHLRNMII+PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP
Sbjct: 74  EAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKP 133

Query: 374 VKH 382
            KH
Sbjct: 134 TKH 136


>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
           S19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 52.0 bits (119), Expect = 3e-08
 Identities = 23/49 (46%), Positives = 35/49 (71%)
 Frame = +2

Query: 224 VKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYK 370
           +KT +R+  I+P MVG+   ++NGK++  V+I  +MIGH LGEF+ T K
Sbjct: 50  IKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 98


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 27.9 bits (59), Expect = 0.58
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 191 KEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYN 292
           K A P++KP +  THL +++I    VG  +  ++
Sbjct: 60  KRARPSQKPPLRSTHLPHLLIFALFVGKHIACFH 93


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 286 NADN*TDHLGNDDHVSQVSLHDLWLLIR 203
           N  N T H+ ++  V +V++HD+W  I+
Sbjct: 18  NVPNETKHIFDEISVKEVAVHDIWKRIQ 45


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 290 NGKTFNQVEIKPEMIGHYLGEFSVTYKPV 376
           N +TF+  E   E     + +F VT KP+
Sbjct: 829 NSETFDDFEFSVEQFNSLINQFVVTGKPI 857


>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 24  SVFSGSSLTGELISISSLICPMSNSWN 104
           +  +   +TG +++ISS +C + N +N
Sbjct: 148 AALASKDITGTIVAISSELCAVENQFN 174


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 143 LKRKPMALVKKLRRAKKEAPPNEKPEIVKTHL 238
           L R+P  + +K R   KEA PN    I++  L
Sbjct: 10  LPRRPPYMAEKARATLKEAFPNTDDAIIRAVL 41


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +2

Query: 185 AKKEAPPNEKPEIVKTHLRNMIIV----PEMVGSIVGIYNGKTFNQVEIKPEMIG 337
           A  E  P+  P+++ + L +  +     P + GS+  +Y    FN V++  +  G
Sbjct: 192 AASEISPSSSPQLLTSFLPSGSVSNPSSPYLQGSVGALYEADAFNFVDVMSQASG 246


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 103 FHELLIGHIKELIEINSPVSELPENTLFIEGF 8
           F EL IG +KEL  +NS      +  +  +GF
Sbjct: 401 FEELAIGLVKELHRVNSRYYTYQQACIPYDGF 432


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 14  LNKKRIFRKFTYRGVDLDQLLDMPNEQLMELMH 112
           L++K I       G+D+D L D+ NE+   ++H
Sbjct: 13  LDEKIISSYNDANGLDIDDLWDIYNEKTRRMIH 45


>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 359 LRTLPGNGRSSQA*FQPG*KFFR 291
           L+ LPG G  SQ   QPG  + R
Sbjct: 302 LKVLPGQGMLSQRHHQPGNLYIR 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,451,160
Number of Sequences: 5004
Number of extensions: 25451
Number of successful extensions: 80
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)