Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5997
(743 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39745-7|AAA80449.1| 612|Caenorhabditis elegans Uncoordinated p... 203 9e-53
M80241-1|AAA28157.1| 612|Caenorhabditis elegans unc-6 protein. 203 9e-53
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related... 159 3e-39
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 62 5e-10
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 62 5e-10
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 62 5e-10
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 49 4e-06
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 49 4e-06
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 49 4e-06
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 49 4e-06
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 48 5e-06
Z69646-8|CAA93477.3| 896|Caenorhabditis elegans Hypothetical pr... 32 0.49
Z50794-7|CAA90661.3| 896|Caenorhabditis elegans Hypothetical pr... 32 0.49
U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily ass... 31 0.65
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 31 1.1
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 31 1.1
AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical... 30 1.5
AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical ... 30 1.5
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 30 2.0
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 30 2.0
U13644-4|AAB52682.1| 412|Caenorhabditis elegans Hypothetical pr... 29 4.6
AF077544-1|AAK39241.2| 231|Caenorhabditis elegans Hypothetical ... 28 6.1
Z92825-8|CAB07316.2| 469|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z82095-2|CAB05027.2| 602|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z75955-18|CAB00126.2| 469|Caenorhabditis elegans Hypothetical p... 28 8.0
Z70718-5|CAA94670.1| 197|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 28 8.0
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 28 8.0
L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell m... 28 8.0
L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell m... 28 8.0
L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell m... 28 8.0
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 28 8.0
>U39745-7|AAA80449.1| 612|Caenorhabditis elegans Uncoordinated
protein 6 protein.
Length = 612
Score = 203 bits (496), Expect = 9e-53
Identities = 102/203 (50%), Positives = 133/203 (65%), Gaps = 5/203 (2%)
Frame = +3
Query: 147 DPCYEES-RPRRCIPDFVNAAFGAPVIASSACGRRGPENLCDPPLDQSPE----LACRVC 311
DPC++ + RP RC+P+F+NAAFG PVIAS CG P+ C + + P+ C C
Sbjct: 35 DPCHDHTGRPVRCVPEFINAAFGKPVIASDTCGTNRPDKYCT--VKEGPDGIIREQCDTC 92
Query: 312 DAARPDRRHPSLYLTDLNNPNNITCWRSAALMPASYDSPPDNVSLTLSLGKKYELTYISL 491
DA + HP+ LTDLN+ N+TCW S + P NVSLTLSLGKK+ELTY+S+
Sbjct: 93 DARNHFQSHPASLLTDLNSIGNMTCWVSTPSLS------PQNVSLTLSLGKKFELTYVSM 146
Query: 492 QFCPKSARPDSVAIYKSADYGLNWQPFQFYSSQCRRVYGRPNKATVTAANEQEARCSDTH 671
FC S PDS+A+YKSAD+G W PFQFYSS+CRR++GR ++T +NEQEA C+ +H
Sbjct: 147 HFC--SRLPDSMALYKSADFGKTWTPFQFYSSECRRIFGRDPDVSITKSNEQEAVCTASH 204
Query: 672 RLAGDSAGGARLAFSTLEGRPSA 740
+ GG R+AF LE RPSA
Sbjct: 205 IM---GPGGNRVAFPFLENRPSA 224
>M80241-1|AAA28157.1| 612|Caenorhabditis elegans unc-6 protein.
Length = 612
Score = 203 bits (496), Expect = 9e-53
Identities = 102/203 (50%), Positives = 133/203 (65%), Gaps = 5/203 (2%)
Frame = +3
Query: 147 DPCYEES-RPRRCIPDFVNAAFGAPVIASSACGRRGPENLCDPPLDQSPE----LACRVC 311
DPC++ + RP RC+P+F+NAAFG PVIAS CG P+ C + + P+ C C
Sbjct: 35 DPCHDHTGRPVRCVPEFINAAFGKPVIASDTCGTNRPDKYCT--VKEGPDGIIREQCDTC 92
Query: 312 DAARPDRRHPSLYLTDLNNPNNITCWRSAALMPASYDSPPDNVSLTLSLGKKYELTYISL 491
DA + HP+ LTDLN+ N+TCW S + P NVSLTLSLGKK+ELTY+S+
Sbjct: 93 DARNHFQSHPASLLTDLNSIGNMTCWVSTPSLS------PQNVSLTLSLGKKFELTYVSM 146
Query: 492 QFCPKSARPDSVAIYKSADYGLNWQPFQFYSSQCRRVYGRPNKATVTAANEQEARCSDTH 671
FC S PDS+A+YKSAD+G W PFQFYSS+CRR++GR ++T +NEQEA C+ +H
Sbjct: 147 HFC--SRLPDSMALYKSADFGKTWTPFQFYSSECRRIFGRDPDVSITKSNEQEAVCTASH 204
Query: 672 RLAGDSAGGARLAFSTLEGRPSA 740
+ GG R+AF LE RPSA
Sbjct: 205 IM---GPGGNRVAFPFLENRPSA 224
>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
see also lmb-protein 2 protein.
Length = 1535
Score = 159 bits (385), Expect = 3e-39
Identities = 80/200 (40%), Positives = 107/200 (53%), Gaps = 2/200 (1%)
Frame = +3
Query: 147 DPCYEES--RPRRCIPDFVNAAFGAPVIASSACGRRGPENLCDPPLDQSPELACRVCDAA 320
+PCY+ + +P+RC+PDFVNAAF V ++ CG + P C C CD
Sbjct: 23 NPCYDRATRQPQRCVPDFVNAAFNLEVQVTNTCGTKRPTKFCVQSGHTGQRSVCETCDDR 82
Query: 321 RPDRRHPSLYLTDLNNPNNITCWRSAALMPASYDSPPDNVSLTLSLGKKYELTYISLQFC 500
HP+ YLTD N NN T W+S + P +LTL LGK +++TY+ L+F
Sbjct: 83 HEGFSHPAKYLTDFNVGNNETWWQSDTMQEG--QQYPTTTNLTLVLGKSFDITYVRLKFI 140
Query: 501 PKSARPDSVAIYKSADYGLNWQPFQFYSSQCRRVYGRPNKATVTAANEQEARCSDTHRLA 680
S RP+S IYK W+P+QFYS CR YG ++A + NE A+C+
Sbjct: 141 --SPRPESFTIYKKTHTDSEWEPWQFYSGSCRATYGLSDRAPILPGNEATAQCTKEFSDI 198
Query: 681 GDSAGGARLAFSTLEGRPSA 740
GG +AFSTLEGRPSA
Sbjct: 199 SPITGG-NIAFSTLEGRPSA 217
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 61.7 bits (143), Expect = 5e-10
Identities = 56/202 (27%), Positives = 88/202 (43%), Gaps = 13/202 (6%)
Frame = +3
Query: 174 RRCIPDFVNAAFGAPVIASSACGRRGPENLCD---------PPLDQSPELACRVCDAARP 326
R P+ N A + + A+ CG+ E C QSP+ C +CDA
Sbjct: 46 RGLFPNIFNLATNSLITATDTCGQYTAEEYCKLVEHVLLRKTTNTQSPQ--CDICDANNV 103
Query: 327 DRRHPSLYLTDLNNPNNITCWRSAALMPASYDSPPDNVSLTLSLGKKYELTYISLQFCPK 506
+RHP Y D W+S +L + + V++T+ L ++Y++ YI L+
Sbjct: 104 HKRHPIEYAID----GTRRWWQSPSL---ANGLRFEKVNITIDLRQEYQVAYIILKM-GN 155
Query: 507 SARPDSVAIYKSADYGLNWQPFQFYSSQ---CRRVYGRPNKATVTA-ANEQEARCSDTHR 674
S RP + + KS D G ++P+Q+Y+ Q C R +G P V E E C+ +
Sbjct: 156 SPRPGTWVLEKSLD-GEYYEPWQYYAMQDAECMRQFGIPATTGVPRFQKEDEVHCTSEYS 214
Query: 675 LAGDSAGGARLAFSTLEGRPSA 740
G + S + GRP A
Sbjct: 215 KITPLENG-EIHTSLVNGRPGA 235
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 61.7 bits (143), Expect = 5e-10
Identities = 56/202 (27%), Positives = 88/202 (43%), Gaps = 13/202 (6%)
Frame = +3
Query: 174 RRCIPDFVNAAFGAPVIASSACGRRGPENLCD---------PPLDQSPELACRVCDAARP 326
R P+ N A + + A+ CG+ E C QSP+ C +CDA
Sbjct: 46 RGLFPNIFNLATNSLITATDTCGQYTAEEYCKLVEHVLLRKTTNTQSPQ--CDICDANNV 103
Query: 327 DRRHPSLYLTDLNNPNNITCWRSAALMPASYDSPPDNVSLTLSLGKKYELTYISLQFCPK 506
+RHP Y D W+S +L + + V++T+ L ++Y++ YI L+
Sbjct: 104 HKRHPIEYAID----GTRRWWQSPSL---ANGLRFEKVNITIDLRQEYQVAYIILKM-GN 155
Query: 507 SARPDSVAIYKSADYGLNWQPFQFYSSQ---CRRVYGRPNKATVTA-ANEQEARCSDTHR 674
S RP + + KS D G ++P+Q+Y+ Q C R +G P V E E C+ +
Sbjct: 156 SPRPGTWVLEKSLD-GEYYEPWQYYAMQDAECMRQFGIPATTGVPRFQKEDEVHCTSEYS 214
Query: 675 LAGDSAGGARLAFSTLEGRPSA 740
G + S + GRP A
Sbjct: 215 KITPLENG-EIHTSLVNGRPGA 235
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 61.7 bits (143), Expect = 5e-10
Identities = 56/202 (27%), Positives = 88/202 (43%), Gaps = 13/202 (6%)
Frame = +3
Query: 174 RRCIPDFVNAAFGAPVIASSACGRRGPENLCD---------PPLDQSPELACRVCDAARP 326
R P+ N A + + A+ CG+ E C QSP+ C +CDA
Sbjct: 46 RGLFPNIFNLATNSLITATDTCGQYTAEEYCKLVEHVLLRKTTNTQSPQ--CDICDANNV 103
Query: 327 DRRHPSLYLTDLNNPNNITCWRSAALMPASYDSPPDNVSLTLSLGKKYELTYISLQFCPK 506
+RHP Y D W+S +L + + V++T+ L ++Y++ YI L+
Sbjct: 104 HKRHPIEYAID----GTRRWWQSPSL---ANGLRFEKVNITIDLRQEYQVAYIILKM-GN 155
Query: 507 SARPDSVAIYKSADYGLNWQPFQFYSSQ---CRRVYGRPNKATVTA-ANEQEARCSDTHR 674
S RP + + KS D G ++P+Q+Y+ Q C R +G P V E E C+ +
Sbjct: 156 SPRPGTWVLEKSLD-GEYYEPWQYYAMQDAECMRQFGIPATTGVPRFQKEDEVHCTSEYS 214
Query: 675 LAGDSAGGARLAFSTLEGRPSA 740
G + S + GRP A
Sbjct: 215 KITPLENG-EIHTSLVNGRPGA 235
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
protein K08C7.3b protein.
Length = 3672
Score = 48.8 bits (111), Expect = 4e-06
Identities = 35/147 (23%), Positives = 66/147 (44%)
Frame = +3
Query: 300 CRVCDAARPDRRHPSLYLTDLNNPNNITCWRSAALMPASYDSPPDNVSLTLSLGKKYELT 479
C C+A + HP+ + D NN + W S P S + V++T+ L +++ +
Sbjct: 101 CGHCNAGN-ENSHPAANMVDGNN----SWWMSP---PLSRGLQHNEVNITIDLEQEFHVA 152
Query: 480 YISLQFCPKSARPDSVAIYKSADYGLNWQPFQFYSSQCRRVYGRPNKATVTAANEQEARC 659
Y+ +Q S RP S + +S D+G +QP+ ++ R +++ +E ++
Sbjct: 153 YVWIQMA-NSPRPGSWVLERSTDHGKTYQPWFNFAENAAECMRRFGMESLSPISEDDSVT 211
Query: 660 SDTHRLAGDSAGGARLAFSTLEGRPSA 740
T + A + LE RPS+
Sbjct: 212 CRTDMASLQPLENAEMVIRILEHRPSS 238
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
protein K08C7.3a protein.
Length = 3704
Score = 48.8 bits (111), Expect = 4e-06
Identities = 35/147 (23%), Positives = 66/147 (44%)
Frame = +3
Query: 300 CRVCDAARPDRRHPSLYLTDLNNPNNITCWRSAALMPASYDSPPDNVSLTLSLGKKYELT 479
C C+A + HP+ + D NN + W S P S + V++T+ L +++ +
Sbjct: 101 CGHCNAGN-ENSHPAANMVDGNN----SWWMSP---PLSRGLQHNEVNITIDLEQEFHVA 152
Query: 480 YISLQFCPKSARPDSVAIYKSADYGLNWQPFQFYSSQCRRVYGRPNKATVTAANEQEARC 659
Y+ +Q S RP S + +S D+G +QP+ ++ R +++ +E ++
Sbjct: 153 YVWIQMA-NSPRPGSWVLERSTDHGKTYQPWFNFAENAAECMRRFGMESLSPISEDDSVT 211
Query: 660 SDTHRLAGDSAGGARLAFSTLEGRPSA 740
T + A + LE RPS+
Sbjct: 212 CRTDMASLQPLENAEMVIRILEHRPSS 238
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 48.8 bits (111), Expect = 4e-06
Identities = 35/147 (23%), Positives = 66/147 (44%)
Frame = +3
Query: 300 CRVCDAARPDRRHPSLYLTDLNNPNNITCWRSAALMPASYDSPPDNVSLTLSLGKKYELT 479
C C+A + HP+ + D NN + W S P S + V++T+ L +++ +
Sbjct: 101 CGHCNAGN-ENSHPAANMVDGNN----SWWMSP---PLSRGLQHNEVNITIDLEQEFHVA 152
Query: 480 YISLQFCPKSARPDSVAIYKSADYGLNWQPFQFYSSQCRRVYGRPNKATVTAANEQEARC 659
Y+ +Q S RP S + +S D+G +QP+ ++ R +++ +E ++
Sbjct: 153 YVWIQMA-NSPRPGSWVLERSTDHGKTYQPWFNFAENAAECMRRFGMESLSPISEDDSVT 211
Query: 660 SDTHRLAGDSAGGARLAFSTLEGRPSA 740
T + A + LE RPS+
Sbjct: 212 CRTDMASLQPLENAEMVIRILEHRPSS 238
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 48.8 bits (111), Expect = 4e-06
Identities = 35/147 (23%), Positives = 66/147 (44%)
Frame = +3
Query: 300 CRVCDAARPDRRHPSLYLTDLNNPNNITCWRSAALMPASYDSPPDNVSLTLSLGKKYELT 479
C C+A + HP+ + D NN + W S P S + V++T+ L +++ +
Sbjct: 101 CGHCNAGN-ENSHPAANMVDGNN----SWWMSP---PLSRGLQHNEVNITIDLEQEFHVA 152
Query: 480 YISLQFCPKSARPDSVAIYKSADYGLNWQPFQFYSSQCRRVYGRPNKATVTAANEQEARC 659
Y+ +Q S RP S + +S D+G +QP+ ++ R +++ +E ++
Sbjct: 153 YVWIQMA-NSPRPGSWVLERSTDHGKTYQPWFNFAENAAECMRRFGMESLSPISEDDSVT 211
Query: 660 SDTHRLAGDSAGGARLAFSTLEGRPSA 740
T + A + LE RPS+
Sbjct: 212 CRTDMASLQPLENAEMVIRILEHRPSS 238
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 48.4 bits (110), Expect = 5e-06
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 3/148 (2%)
Frame = +3
Query: 159 EESRPRRCIPDFVNAAFG--APVIASSACGRRGPENLCDPPLDQSPELACRVCDAARPDR 332
+ + R C P N G + + A+S CG +G + C + C CD+ +
Sbjct: 30 DRCQDRSCYPITGNLLIGRKSQLKATSTCGSQGRQRFCIVS-HLEEQTKCFYCDSRTEWK 88
Query: 333 RHPSLYLTDLNNPNNIT-CWRSAALMPASYDSPPDNVSLTLSLGKKYELTYISLQFCPKS 509
Y N +T ++ NVS++ L ++ T++ + F KS
Sbjct: 89 PQREPYRLSHRIENVVTEVMDDKNRNWYQSENGAQNVSISFDLEAEFHFTHLIMTF--KS 146
Query: 510 ARPDSVAIYKSADYGLNWQPFQFYSSQC 593
RP ++ I +SAD+G WQ +++++ C
Sbjct: 147 FRPAAMIIERSADFGKTWQVYRYFAYDC 174
>Z69646-8|CAA93477.3| 896|Caenorhabditis elegans Hypothetical
protein F59F5.7 protein.
Length = 896
Score = 31.9 bits (69), Expect = 0.49
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Frame = -2
Query: 469 YFFPRERVSDTLSGGESYEAG--MSAAERQHVMLLGLLRSVR*SDGWRRSGRAASHTLQA 296
Y RE TL E ++ MS+ +H LG+ S + + + A + +
Sbjct: 145 YLMQRELDMQTLVPPERPQSSSKMSSLPSRHT--LGVEESQTFNMKHKIASVAIPNGVPM 202
Query: 295 SSGDWSSGGSHRFSGPRRPHAEDAITGAPKAAF 197
++G+W +G H +SG RR HA G+P +
Sbjct: 203 TAGNWETGQPH-YSGDRRLHAASTFVGSPSIPY 234
>Z50794-7|CAA90661.3| 896|Caenorhabditis elegans Hypothetical
protein F59F5.7 protein.
Length = 896
Score = 31.9 bits (69), Expect = 0.49
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Frame = -2
Query: 469 YFFPRERVSDTLSGGESYEAG--MSAAERQHVMLLGLLRSVR*SDGWRRSGRAASHTLQA 296
Y RE TL E ++ MS+ +H LG+ S + + + A + +
Sbjct: 145 YLMQRELDMQTLVPPERPQSSSKMSSLPSRHT--LGVEESQTFNMKHKIASVAIPNGVPM 202
Query: 295 SSGDWSSGGSHRFSGPRRPHAEDAITGAPKAAF 197
++G+W +G H +SG RR HA G+P +
Sbjct: 203 TAGNWETGQPH-YSGDRRLHAASTFVGSPSIPY 234
>U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily
assigned gene nameprotein 153, isoform b protein.
Length = 733
Score = 31.5 bits (68), Expect = 0.65
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 481 TSAYSSVRSLPDQTQWRSTRVQ-ITGSTGNLSSSTRVS 591
+SA SS S ++TQW++ R Q TG+ NLS +T+ S
Sbjct: 18 SSALSSSGSTHNETQWKNLRPQTATGADTNLSKNTKSS 55
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 329 PPPPVALSHRPQQPQ*HNVLALGRAHASLVRLTSRQCVADPLPRE 463
PPPP A S + QQPQ + LG +V R+ + P+P+E
Sbjct: 1131 PPPPTATSTQSQQPQ--FLEGLGMTDNEIVADAIRRGMVAPIPQE 1173
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -3
Query: 267 RTGSRARDGRTLKTRS--RGHRKQHSRNRGCTSEGATPRSR 151
R+ SR++D RT + RS R R+ SR+RG + RSR
Sbjct: 67 RSRSRSKDRRTTRRRSPSRERRRSRSRDRGAPRRRSRTRSR 107
>AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical
protein T08B2.5d protein.
Length = 163
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = -3
Query: 294 APETGRVEGRTGSRARDGRTLKTRSRG-HRKQHSRNRGCTSEGATPRSRGPV 142
+P R R+ SR+RD R ++RSR R++ SR+R + ++ R RGP+
Sbjct: 109 SPSWAREARRSRSRSRDRRGGRSRSRSPSRRRTSRDR--RDDRSSRRRRGPI 158
>AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical
protein T08B2.5e protein.
Length = 184
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = -3
Query: 294 APETGRVEGRTGSRARDGRTLKTRSRG-HRKQHSRNRGCTSEGATPRSRGPV 142
+P R R+ SR+RD R ++RSR R++ SR+R + ++ R RGP+
Sbjct: 130 SPSWAREARRSRSRSRDRRGGRSRSRSPSRRRTSRDR--RDDRSSRRRRGPI 179
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 225 ASSACGRRGPENLCDPPLDQSPELACRVCDAARPDRRHP 341
A+ G+ G + L D PLD P C +C A P R P
Sbjct: 117 ANGRPGKPGLDGL-DVPLDPEPAFPCVICPAGPPGTRGP 154
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 225 ASSACGRRGPENLCDPPLDQSPELACRVCDAARPDRRHP 341
A+ G+ G + L D PLD P C +C A P R P
Sbjct: 117 ANGRPGKPGLDGL-DVPLDPEPAFPCVICPAGPPGTRGP 154
>U13644-4|AAB52682.1| 412|Caenorhabditis elegans Hypothetical
protein F56D2.3 protein.
Length = 412
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 156 YEESRPRRCIPDFVNAAFGAPVIASSACGRRGPENLCDPP 275
Y ++ +PD+VNA +G P I + RR N+ +PP
Sbjct: 149 YGDANEGAAMPDYVNAYYGFPTIPTQEPRRRPSFNM-NPP 187
>AF077544-1|AAK39241.2| 231|Caenorhabditis elegans Hypothetical
protein H22K11.3 protein.
Length = 231
Score = 28.3 bits (60), Expect = 6.1
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = -2
Query: 289 GDWSSGGSHRFSGPRRPHAEDAITGA 212
G+W+ S+ +SGP++P +++I G+
Sbjct: 70 GNWNGPNSNGYSGPQQPPPDNSIKGS 95
>Z92825-8|CAB07316.2| 469|Caenorhabditis elegans Hypothetical
protein C13C4.2 protein.
Length = 469
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 144 PDPCYEESRPRRCIPDFVNAAFGAPVIAS 230
P PC E RPRR ++V+ ++ A + +S
Sbjct: 248 PSPCANEKRPRRHFTNYVHTSYLASLESS 276
>Z82095-2|CAB05027.2| 602|Caenorhabditis elegans Hypothetical
protein ZK849.4 protein.
Length = 602
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 329 PPPPVALSHRPQQPQ*HNVLALGRAHASLVRLTSRQCVAD--PLPREEI*VDVHQPTVLS 502
PPPP A + R QP+ H+++ A A Q ++ P P E H P + +
Sbjct: 502 PPPPPAEALRADQPR-HSLIHEVGAQADPAEANGAQALSPVLPNPNERADEHGHSPVIDN 560
Query: 503 EVCPT 517
E P+
Sbjct: 561 EAQPS 565
>Z75955-18|CAB00126.2| 469|Caenorhabditis elegans Hypothetical
protein C13C4.2 protein.
Length = 469
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 144 PDPCYEESRPRRCIPDFVNAAFGAPVIAS 230
P PC E RPRR ++V+ ++ A + +S
Sbjct: 248 PSPCANEKRPRRHFTNYVHTSYLASLESS 276
>Z70718-5|CAA94670.1| 197|Caenorhabditis elegans Hypothetical
protein C04G2.8 protein.
Length = 197
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -3
Query: 282 GRVEGRTG---SRARDGRTLKTRSRGHRKQHSRNRGCTSEGATPRSR 151
G V GRTG S R ++RSR + +SR+R + + RSR
Sbjct: 111 GSVYGRTGRSRSSKRSRSRSRSRSRSRSRSYSRSRSGSRRSSRRRSR 157
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = +2
Query: 539 ECRLRAQLATFPV--LLESVSAGVRPAQQGHGDRRERAGGEVLRHPPSGRRQCRRRATCI 712
+C A+ P+ + + VS V ++Q HG R V+ GR C ATCI
Sbjct: 138 DCAAEAECRETPIGPMCQCVSGYVDVSRQ-HGRPAGRVCRAVVNECAEGRHDCSSHATCI 196
Query: 713 *YPRGSTQR 739
G T R
Sbjct: 197 DTADGFTCR 205
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = +2
Query: 539 ECRLRAQLATFPV--LLESVSAGVRPAQQGHGDRRERAGGEVLRHPPSGRRQCRRRATCI 712
+C A+ P+ + + VS V ++Q HG R V+ GR C ATCI
Sbjct: 722 DCAAEAECRETPIGPMCQCVSGYVDVSRQ-HGRPAGRVCRAVVNECAEGRHDCSSHATCI 780
Query: 713 *YPRGSTQR 739
G T R
Sbjct: 781 DTADGFTCR 789
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = +2
Query: 539 ECRLRAQLATFPV--LLESVSAGVRPAQQGHGDRRERAGGEVLRHPPSGRRQCRRRATCI 712
+C A+ P+ + + VS V ++Q HG R V+ GR C ATCI
Sbjct: 138 DCAAEAECRETPIGPMCQCVSGYVDVSRQ-HGRPAGRVCRAVVNECAEGRHDCSSHATCI 196
Query: 713 *YPRGSTQR 739
G T R
Sbjct: 197 DTADGFTCR 205
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = +2
Query: 539 ECRLRAQLATFPV--LLESVSAGVRPAQQGHGDRRERAGGEVLRHPPSGRRQCRRRATCI 712
+C A+ P+ + + VS V ++Q HG R V+ GR C ATCI
Sbjct: 722 DCAAEAECRETPIGPMCQCVSGYVDVSRQ-HGRPAGRVCRAVVNECAEGRHDCSSHATCI 780
Query: 713 *YPRGSTQR 739
G T R
Sbjct: 781 DTADGFTCR 789
>L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell
migration protein10, isoform b protein.
Length = 650
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +2
Query: 302 QGVRCGSA*PPPPVALSHR--PQQPQ 373
+ V+ S PPPP ALS+ PQQPQ
Sbjct: 64 ENVKSISTLPPPPPALSYHQTPQQPQ 89
>L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell
migration protein10, isoform a protein.
Length = 667
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +2
Query: 302 QGVRCGSA*PPPPVALSHR--PQQPQ 373
+ V+ S PPPP ALS+ PQQPQ
Sbjct: 81 ENVKSISTLPPPPPALSYHQTPQQPQ 106
>L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell
migration protein10, isoform c protein.
Length = 779
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +2
Query: 302 QGVRCGSA*PPPPVALSHR--PQQPQ 373
+ V+ S PPPP ALS+ PQQPQ
Sbjct: 193 ENVKSISTLPPPPPALSYHQTPQQPQ 218
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
cell adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = +2
Query: 539 ECRLRAQLATFPV--LLESVSAGVRPAQQGHGDRRERAGGEVLRHPPSGRRQCRRRATCI 712
+C A+ P+ + + VS V ++Q HG R V+ GR C ATCI
Sbjct: 722 DCAAEAECRETPIGPMCQCVSGYVDVSRQ-HGRPAGRVCRAVVNECAEGRHDCSSHATCI 780
Query: 713 *YPRGSTQR 739
G T R
Sbjct: 781 DTADGFTCR 789
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,928,143
Number of Sequences: 27780
Number of extensions: 360570
Number of successful extensions: 1206
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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