Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5997
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   1.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.0  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   5.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   7.0  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -2

Query: 337 WRRSGRAASHTLQASSGDWSSGGSHRFSGPRRPHAEDAITG 215
           W+ + RAA  T+ AS G    G     +GP R      I G
Sbjct: 251 WQYAARAAISTMLASMGGGLVGLGFSLNGPDRIDILSQING 291


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +1

Query: 478 RTSAYSSVRSLPDQTQWRS 534
           ++SA+  +++LPD+  W S
Sbjct: 6   QSSAFKEIKTLPDRGMWSS 24


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +1

Query: 478 RTSAYSSVRSLPDQTQWRS 534
           ++SA+  +++LPD+  W S
Sbjct: 59  QSSAFKEIKTLPDRGMWSS 77


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 73  LHLHSRQVRGTRYRG 29
           L+LH R VRGTR  G
Sbjct: 297 LNLHHRGVRGTRVPG 311


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 222 SRGHRKQHSRNRGCTSEGATPRSRGP 145
           S  H  +  +N+    +GATPR   P
Sbjct: 206 SEEHGNKKKKNKEDEDDGATPRKAPP 231


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 608 PAQQGHGDRRERAGGEVLRHPPSGR 682
           P    HGDR +R   E L    SGR
Sbjct: 477 PTTSIHGDRLQRQREEALADFKSGR 501


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,658
Number of Sequences: 438
Number of extensions: 3857
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)