Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5996
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo...    29   0.57 
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    29   0.99 
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    28   1.3  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.7  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    27   4.0  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   5.3  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   5.3  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    26   5.3  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   7.0  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    26   7.0  

>SPAC30.02c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 281

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 356 YSSHLSQYTTHCYLHISHPAD 418
           Y    S YTTHC +H++ P D
Sbjct: 99  YCESKSMYTTHCVIHVAVPQD 119


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -3

Query: 473 ILSNPSSISKDFLRASSVCPPDERYASSNEWYTEKGEKNMLSSGTASLIVLKRFN 309
           ++SNPS++  D+     VCPP+E   S++   T+  +   L + T   +    FN
Sbjct: 419 VVSNPSTLDDDY-NYMFVCPPEEYTYSTDNVRTDSLDLQSLPTPTLEQLESVPFN 472


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 66  FYNLPSARRFYLILNQFTRKENNSYLHTIRG-HHSNHNAEVSN 191
           F+ LPS      +L    R   N+ L  + G  H +HNA+  N
Sbjct: 398 FHGLPSLADLPAVLESMFRPSGNNNLLNLNGIFHPDHNAQTEN 440


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 1/141 (0%)
 Frame = +1

Query: 310 LNLFNTINDAVPDDNIFFSPFSVYHSLLLAYLSSGGQTEEALRKSLEIEDGLDKINLMTA 489
           L LF  +N+A PDD+I   P  +Y+ +    L         LR  L+  DG  +I L   
Sbjct: 64  LTLFAPLNEAFPDDSI--EPNLLYYIVNTTELD-----RSVLRTQLKSSDG-QQIALKIH 115

Query: 490 YKVDK-RARGINNNSDSYEFTSANKLFAADDLNVRQCMLDLFAEDLETLNFRENPGAARD 666
           YK +  RA    NN+   +   +N    +  + V   ++DL    LE L+  ++      
Sbjct: 116 YKAETGRAYDKVNNA---QIVQSNWRADSGVVQVIDNIIDLPPPALEILSSEKDFSIFHR 172

Query: 667 YINSWVSRVTKNHISDLIPAS 729
              +WV   +   ++ L+P S
Sbjct: 173 LSVAWVGEYSS--VTMLVPDS 191


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 345 GYSVVDCIKKI*RESQLAVIQSGPRLRIQLFRRVIFVEALAG 220
           G  + DC ++  RESQ     SGP L +  F+RVI +    G
Sbjct: 99  GIKIQDCSERSLRESQ-----SGPLLLVDPFQRVICLHVYQG 135


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 469 YPIHPRFLKISSELLQFVRRMRDMQVAM 386
           +P  P  L + SEL+QF RR   +Q  M
Sbjct: 460 FPSSPSSLPLLSELIQFSRRPSPVQTGM 487


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 497 TLYAVIKFILSNPSSISKDFLRASSVCP 414
           +L++ ++ IL +P+S     LRA  +CP
Sbjct: 544 SLFSTLRIILEHPNSSRLQKLRAPGLCP 571


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
 Frame = -3

Query: 656 APGFSRKFKVSRSSAKRSSMHCRTLRSSAANS----LFALVNS*LSLLLFIPRARLSTLY 489
           AP  +R      S+        R LRS+        LFAL +  + L++   +ARLS+L 
Sbjct: 227 APELTRTHSYQSSATLSIDEQRRVLRSNYFQQEIQFLFALQDISIRLIIVPRQARLSSLR 286

Query: 488 AVIKFILSN-PSSISKDFLRA 429
           A +  + +N P+ ++   LR+
Sbjct: 287 AELALLNNNLPADVNIPLLRS 307


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = -3

Query: 500  STLYAVIKFILSNPSSISKDFLRASSVCPPDERYASSNEWYTEKGEKNMLSSGTASLIVL 321
            ST   V    L N  + +   L  S  C P +  A+ + W+ E G   +    T S  VL
Sbjct: 1591 STFTNVSPHDLLNSLAYTVSSLEVSQRCSPKQSGATRSVWFNELGPLTLSFLPTLSDTVL 1650

Query: 320  K 318
            K
Sbjct: 1651 K 1651


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 467 SNPSSISKDFLRASSVCPPDERYASSNEWYTEKGEK 360
           SN S+  K+  +A +  PP   ++ ++E   EKGE+
Sbjct: 296 SNDSASRKEKPKARASTPPPLNFSRASEHRNEKGER 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,198,689
Number of Sequences: 5004
Number of extensions: 66608
Number of successful extensions: 186
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)