Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5996
(781 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0750 - 6315126-6315896,6316371-6316784 52 4e-07
11_02_0011 - 7337618-7338496,7338596-7338991 52 5e-07
11_01_0767 + 6438648-6438809,6439146-6440000 50 2e-06
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 47 1e-05
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 46 3e-05
01_06_0824 - 32243495-32244319,32244449-32244859 46 3e-05
11_02_0012 - 7346282-7347136,7347234-7347593 45 6e-05
11_01_0771 + 6453130-6454488 44 1e-04
11_02_0014 - 7352619-7352918,7353173-7353418 42 4e-04
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647... 29 4.1
06_03_1214 + 28469848-28473048 29 5.5
12_01_0548 + 4394182-4394313,4394395-4394517 28 7.2
03_06_0124 - 31830797-31831371,31831510-31831532,31832143-318322... 28 7.2
06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764 28 9.6
05_06_0044 - 25150322-25151260 28 9.6
04_04_1528 + 34172149-34172233,34172335-34172414,34172621-341726... 28 9.6
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 52.4 bits (120), Expect = 4e-07
Identities = 51/175 (29%), Positives = 74/175 (42%), Gaps = 9/175 (5%)
Frame = +1
Query: 280 ALYNGQLGFTLNLFNTINDAVPDDNIFFSPFSVYHSLLLAYLSSGGQTEEALRKSLEIED 459
AL Q F L L + A N S +V+ SL LA + G T + ++L
Sbjct: 9 ALAAAQRAFCLPLAGRVLAAAGTGNAAVSAPAVHVSLALAAGGARGATRRQVLQALGCGG 68
Query: 460 G-----LDKINLMTAYKVDKRARGINNNSDSYEFTSANKLFAADDLNVRQCMLDL----F 612
G D N+ A +V KR + S A ++A ++ + L +
Sbjct: 69 GGRGGAADAANV--ASRVVKRVLRDRSTSGGPRLAFAGGVWADASRSLSPEFVGLAGNVY 126
Query: 613 AEDLETLNFRENPGAARDYINSWVSRVTKNHISDLIPASGISQTTRLVLANAAYF 777
+ +F+ P A D INSWV TK ++ L+PA I Q T LVL +A YF
Sbjct: 127 GSAAKKADFKNKPEDAPDQINSWVKDSTKGTVTTLLPAGTIDQNTGLVLGSALYF 181
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 52.0 bits (119), Expect = 5e-07
Identities = 45/168 (26%), Positives = 68/168 (40%), Gaps = 6/168 (3%)
Frame = +1
Query: 292 GQLGFTLNLFNTINDA--VPDDNIFFSPFSVYHSLLLAYLSSGGQTEE---ALRKSLEIE 456
G F L L + D + N+ FSP S+Y +L L + G T + AL + ++
Sbjct: 10 GMTAFALRLAKRLADVGVSSNKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLD 69
Query: 457 DGLDKINLMTAYKV-DKRARGINNNSDSYEFTSANKLFAADDLNVRQCMLDLFAEDLETL 633
D + + + D+ A G SD+ L R +
Sbjct: 70 DLEESVRRAVEVGLADESASGGPRVSDACGVWHDETLELKPAY--RAAAAGTYKAVTRAA 127
Query: 634 NFRENPGAARDYINSWVSRVTKNHISDLIPASGISQTTRLVLANAAYF 777
NF+ P +R IN WVS+ T I +++P + T LVL NA YF
Sbjct: 128 NFQRQPKRSRKKINKWVSKATNKLIPEILPDGSVHVDTALVLVNAIYF 175
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/63 (38%), Positives = 37/63 (58%)
Frame = +1
Query: 589 RQCMLDLFAEDLETLNFRENPGAARDYINSWVSRVTKNHISDLIPASGISQTTRLVLANA 768
R ++ + T++F+ +P AR IN+WV+R TKN I+++I S TR V+ NA
Sbjct: 35 RDAIVGTYKGAASTVDFKNHPVEARKEINAWVARATKNLITEVIKPESQSVDTRHVVGNA 94
Query: 769 AYF 777
YF
Sbjct: 95 IYF 97
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +1
Query: 670 INSWVSRVTKNHISDLIPASGISQTTRLVLANAAYF 777
+NSWV RVT I +++P + TTRLVL NA YF
Sbjct: 9 VNSWVDRVTSGLIKEILPPGSVDHTTRLVLGNALYF 44
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +1
Query: 670 INSWVSRVTKNHISDLIPASGISQTTRLVLANAAYF 777
+NSWV +VT I +++P + TTRLVL NA YF
Sbjct: 217 VNSWVEKVTSGLIKEILPPGSVDHTTRLVLGNALYF 252
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +1
Query: 670 INSWVSRVTKNHISDLIPASGISQTTRLVLANAAYF 777
+NSWV RVT I ++ I+ T+LVLANA YF
Sbjct: 469 VNSWVDRVTSGLIKNIATPRSINHNTKLVLANALYF 504
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 46.0 bits (104), Expect = 3e-05
Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 6/150 (4%)
Frame = +1
Query: 346 DDNIFFSPFSVYHSLLLAYLSSGGQTEEALRKSLEIEDGLDKINLMTAYKV----DKRAR 513
D N+ SP S++ +L L + G+T + + L G L + + D
Sbjct: 31 DKNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGP 90
Query: 514 GINNNSDSYEFTSANKLFAADDLNVR--QCMLDLFAEDLETLNFRENPGAARDYINSWVS 687
G + F + + AA L + + D + + ++FR+ AR IN W
Sbjct: 91 GDDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFE 150
Query: 688 RVTKNHISDLIPASGISQTTRLVLANAAYF 777
T I D +P + + T VL NA YF
Sbjct: 151 SATAGRIKDFLPKDAVDRATPAVLGNALYF 180
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 45.2 bits (102), Expect = 6e-05
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 2/164 (1%)
Frame = +1
Query: 292 GQLGFTLNLFNTINDAVPDDN--IFFSPFSVYHSLLLAYLSSGGQTEEALRKSLEIEDGL 465
G F L L + D + N + FSP S+Y +L L + G T + L L L
Sbjct: 10 GLTAFALRLAKRLADDGDNSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAAS-L 68
Query: 466 DKINLMTAYKVDKRARGINNNSDSYEFTSANKLFAADDLNVRQCMLDLFAEDLETLNFRE 645
D + V+ G+ + S+S +A + + L +F+
Sbjct: 69 DDLEESVRRAVEV---GLADESES---GGPRVSYACGVWHDERLALK---PAYRAADFQR 119
Query: 646 NPGAARDYINSWVSRVTKNHISDLIPASGISQTTRLVLANAAYF 777
P ++R IN WVS+ T I +++P + T LVL NA YF
Sbjct: 120 QPKSSRKKINKWVSKATNKLIREILPDGSVHGGTALVLVNAIYF 163
>11_01_0771 + 6453130-6454488
Length = 452
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/68 (36%), Positives = 34/68 (50%)
Frame = +1
Query: 574 DDLNVRQCMLDLFAEDLETLNFRENPGAARDYINSWVSRVTKNHISDLIPASGISQTTRL 753
D + QC+LDL +E E AR IN+W R T I+D++P + T +
Sbjct: 154 DPSMIDQCVLDLVSEKAEE---------ARKQINAWARRATGKLITDVLPPRSVGPETAV 204
Query: 754 VLANAAYF 777
VL NA YF
Sbjct: 205 VLGNAIYF 212
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 616 EDLETLNFRE-NPGAARDYINSWVSRVTKNHISDLIPASGISQTTRLVLANAAYF 777
+DL +R P +R IN WVS+ T I +++P + + T LVL NA YF
Sbjct: 71 DDLAESVYRAVEPKKSRKKINEWVSKATNKLIPEILPDGSVHRLTTLVLVNAIYF 125
>06_03_1228 -
28563546-28563630,28563897-28564000,28564256-28564759,
28564854-28564932,28566053-28566130,28566227-28566268,
28566352-28566449,28566542-28566673,28566757-28566879
Length = 414
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1
Query: 157 DIIRTTMLRCLIVVLFVVSTVTSQCFYKDDSSKKL 261
D + TT +R L V+ VVS T CF DDS+ K+
Sbjct: 79 DGVETTNVRVLGRVVSVVSRDTDVCFTLDDSTGKI 113
>06_03_1214 + 28469848-28473048
Length = 1066
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 112 NLPARRTTVTCTPLEDIIRTTMLRCLIVVLFVVSTVTSQCFYKDDSS 252
NLP ++ T T + R L+++L ++ TS C +++SS
Sbjct: 5 NLPCSSSSSTTTTTTTKLSVAFFRLLVILLLSFASPTSSCTEQEESS 51
>12_01_0548 + 4394182-4394313,4394395-4394517
Length = 84
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 22 FKANRIIIHNKIILYSIIFQVLDDFT*FSTNLPARRTTVTCTPLEDI 162
FKA R ++HN I +VL++F +S + A+ T + + D+
Sbjct: 10 FKAERYVLHNPKSFNDIFIRVLEEFVCWSYSFIAQVTRKGSSVISDL 56
>03_06_0124 -
31830797-31831371,31831510-31831532,31832143-31832271,
31833287-31834842
Length = 760
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 388 LLLAYLSSGGQTEEALRKSLEIEDGLDKINLMTAYKV 498
L+ Y++ G T RKS++ E+GL ++ +T K+
Sbjct: 461 LVYKYMAKGDLTSALHRKSVDAEEGLRSLDWITRLKI 497
>06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764
Length = 973
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +1
Query: 412 GGQTEEALRKSLEIEDGLDKINLMTAYKVDKRARGINNNSDSYEFTSANKLFAADDLNV 588
G +TE A + +E GLD ++ V+K I + Y FT K DDLN+
Sbjct: 511 GSKTEAAAVLANIVESGLDPDTIV----VNKEGHVITSKYSVYNFTHMLKCSMPDDLNL 565
>05_06_0044 - 25150322-25151260
Length = 312
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 646 NPGAARDYINSWVSRVTKNHISDLIPAS 729
NP AAR IN W S T + D++ S
Sbjct: 32 NPAAARAEINEWFSSQTGGFVKDILSNS 59
>04_04_1528 +
34172149-34172233,34172335-34172414,34172621-34172689,
34172780-34172837,34173296-34173357,34173441-34173554,
34173862-34173964,34174085-34174134,34174335-34174724,
34174918-34175244,34175360-34175689
Length = 555
Score = 27.9 bits (59), Expect = 9.6
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = -3
Query: 458 SSISKDFLRASSVCPPDERYASSNEWYTEKGEKNMLSSGTASLIVLKRFNVNPSWPLYK 282
+ IS+D L A +V P E AS+N + ++ G+K L S T+ + LK+ + PL K
Sbjct: 87 NEISQDTL-AHAVRHPSELPASANWFNSKSGKKIPLRSVTSIIDGLKKSYIEKLRPLEK 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,279,551
Number of Sequences: 37544
Number of extensions: 411771
Number of successful extensions: 1022
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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