Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5994
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0505 - 34397054-34397087,34397127-34397474,34397650-343977...    30   2.1  
04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095     29   3.6  
01_01_0840 - 6557931-6558377                                           28   6.4  

>03_06_0505 -
           34397054-34397087,34397127-34397474,34397650-34397757,
           34397847-34398161,34399027-34399442,34399531-34400946
          Length = 878

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 76  RGDHQRGLRLQRTEQRSAWC 17
           RGD QR LRL +  QR +WC
Sbjct: 111 RGDWQRSLRLFKYMQRQSWC 130


>04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095
          Length = 597

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
 Frame = -1

Query: 565 WRQPQVQRKLQRERSP*RQQARSTSQLRV*RGRSMRRWLEHREQSM--SRKMVIHERLWT 392
           WRQ  V+++ Q++R+P +QQ     Q    R + +      R  ++   R     ER  +
Sbjct: 322 WRQQMVEQQQQQQRAPMQQQRMPVVQQAAPRKQRVFTVTVSRAYALQHQRGSTPEERRAS 381

Query: 391 SKKILRKQLEK----WSWSQPEMQHKR--TMVQRRTNM---LGQ*RMSMLVQQHKRRQEQ 239
            ++ +R +L+K        + E +++R   ++++R  +     Q ++ + +QQ +RRQEQ
Sbjct: 382 VRERVRLELQKVVAFLQRRELEQRYERAAALLRQRAQLEQAALQEQLKLEMQQMRRRQEQ 441

Query: 238 Q 236
           +
Sbjct: 442 R 442


>01_01_0840 - 6557931-6558377
          Length = 148

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 208 RRQRCGHRERCEL 170
           RR RCGHR RC L
Sbjct: 54  RRPRCGHRRRCHL 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,893,874
Number of Sequences: 37544
Number of extensions: 257302
Number of successful extensions: 982
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)