Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5994
(712 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.032
SB_25665| Best HMM Match : TolA (HMM E-Value=1.7) 35 0.075
SB_7408| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_22903| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05) 33 0.23
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_22132| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59) 32 0.53
SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 30 1.6
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022) 30 2.1
SB_55427| Best HMM Match : E-MAP-115 (HMM E-Value=0.077) 29 2.8
SB_32407| Best HMM Match : WSC (HMM E-Value=0.0008) 29 2.8
SB_5147| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_10193| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_54444| Best HMM Match : zf-CCHC (HMM E-Value=0.035) 29 3.7
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44) 29 4.9
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) 29 4.9
SB_42834| Best HMM Match : C2 (HMM E-Value=3.7e-20) 28 8.6
SB_27920| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_23686| Best HMM Match : NHL (HMM E-Value=2.7e-07) 28 8.6
SB_16421| Best HMM Match : HD-ZIP_N (HMM E-Value=7.6) 28 8.6
>SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1299
Score = 35.9 bits (79), Expect = 0.032
Identities = 41/178 (23%), Positives = 77/178 (43%)
Frame = -1
Query: 562 RQPQVQRKLQRERSP*RQQARSTSQLRV*RGRSMRRWLEHREQSMSRKMVIHERLWTSKK 383
R+ + +RK +R R R++ R + R R + RR R + R+ R ++
Sbjct: 1032 RKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRQRRRKRKRRRKRKRR 1091
Query: 382 ILRKQLEKWSWSQPEMQHKRTMVQRRTNMLGQ*RMSMLVQQHKRRQEQQWS**RLEQHRR 203
RK+ K + + KR ++R + R ++ KRR+++Q R + +R
Sbjct: 1092 RKRKRRRK---RKRRRKRKRRRKRKRRRKRQRRRKRKRRRKRKRRRKRQRRRKRKRRRKR 1148
Query: 202 QRCGHRERCELSKKKPKTQLD*WF*LPQQEPR*RGCKPREQLRGDHQRGLRLQRTEQR 29
QR R+R K++ K + ++ R R K R + + +R R +R +R
Sbjct: 1149 QRRRKRQRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRR 1206
Score = 33.1 bits (72), Expect = 0.23
Identities = 30/135 (22%), Positives = 63/135 (46%)
Frame = -1
Query: 562 RQPQVQRKLQRERSP*RQQARSTSQLRV*RGRSMRRWLEHREQSMSRKMVIHERLWTSKK 383
RQ + +RK +R+R R++ R + R R R RR + R + R+ R ++
Sbjct: 1076 RQRRRKRKRRRKRKRRRKRKRRRKRKRR-RKRKRRRKRKRRRKRQRRRKRKRRRKRKRRR 1134
Query: 382 ILRKQLEKWSWSQPEMQHKRTMVQRRTNMLGQ*RMSMLVQQHKRRQEQQWS**RLEQHRR 203
+++ ++ + + + KR ++R + R ++ KR++ ++ R + RR
Sbjct: 1135 KRQRRRKRKRRRKRQRRRKRQRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRR 1194
Query: 202 QRCGHRERCELSKKK 158
+R R+R K+K
Sbjct: 1195 KRKRRRKRKRRRKRK 1209
Score = 33.1 bits (72), Expect = 0.23
Identities = 32/135 (23%), Positives = 62/135 (45%)
Frame = -1
Query: 562 RQPQVQRKLQRERSP*RQQARSTSQLRV*RGRSMRRWLEHREQSMSRKMVIHERLWTSKK 383
R+ + +RK +R R R++ R + R R + RR R + R+ +R K+
Sbjct: 1086 RKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRQRRRKRKRRRKRKRR---RKRQRRRKR 1142
Query: 382 ILRKQLEKWSWSQPEMQHKRTMVQRRTNMLGQ*RMSMLVQQHKRRQEQQWS**RLEQHRR 203
R++ ++ Q + KR ++R + R ++ KRR++++ R + RR
Sbjct: 1143 KRRRKRQRRRKRQRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRR--RKRKRRR 1200
Query: 202 QRCGHRERCELSKKK 158
+R R+R K+K
Sbjct: 1201 KRKRRRKRKRRRKRK 1215
Score = 32.3 bits (70), Expect = 0.40
Identities = 32/135 (23%), Positives = 60/135 (44%)
Frame = -1
Query: 562 RQPQVQRKLQRERSP*RQQARSTSQLRV*RGRSMRRWLEHREQSMSRKMVIHERLWTSKK 383
R+ + +RK +R R R++ R + R R + RR R + R+ R ++
Sbjct: 1098 RKRKRRRKRKRRRKRKRRRKRQRRRKRKRRRKRKRRRKRQRRRKRKRRRKRQRRRKRQRR 1157
Query: 382 ILRKQLEKWSWSQPEMQHKRTMVQRRTNMLGQ*RMSMLVQQHKRRQEQQWS**RLEQHRR 203
RK+ K + + KR ++R + R ++ KRR++++ R + RR
Sbjct: 1158 RKRKRRRK---RKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRR--RKRKRRR 1212
Query: 202 QRCGHRERCELSKKK 158
+R R+R K+K
Sbjct: 1213 KRKRRRKRKRRRKRK 1227
Score = 31.9 bits (69), Expect = 0.53
Identities = 30/137 (21%), Positives = 63/137 (45%)
Frame = -1
Query: 562 RQPQVQRKLQRERSP*RQQARSTSQLRV*RGRSMRRWLEHREQSMSRKMVIHERLWTSKK 383
R+ + QR+ +R+R R++ R + R + R R+ R++ R+ + +K
Sbjct: 1072 RRRKRQRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRQRRRKRKRRRKRK 1131
Query: 382 ILRKQLEKWSWSQPEMQHKRTMVQRRTNMLGQ*RMSMLVQQHKRRQEQQWS**RLEQHRR 203
RK+ + + + +R QRR + R ++ KRR++++ R + +R
Sbjct: 1132 RRRKRQRRRKRKRRRKRQRRRKRQRRRKRKRR-RKRKRRRKRKRRRKRKRRRKRKRRRKR 1190
Query: 202 QRCGHRERCELSKKKPK 152
+R R+R K++ K
Sbjct: 1191 KRRRKRKRRRKRKRRRK 1207
>SB_25665| Best HMM Match : TolA (HMM E-Value=1.7)
Length = 697
Score = 34.7 bits (76), Expect = 0.075
Identities = 27/122 (22%), Positives = 59/122 (48%)
Frame = -1
Query: 565 WRQPQVQRKLQRERSP*RQQARSTSQLRV*RGRSMRRWLEHREQSMSRKMVIHERLWTSK 386
W Q +R +RE++ RQQ + Q R + +R H++Q ++ +RL +
Sbjct: 209 WHQDNRERYDRREKAAQRQQQQHLQQH---RQQQQQRLDRHQQQQGQQQQQQQQRL-QQR 264
Query: 385 KILRKQLEKWSWSQPEMQHKRTMVQRRTNMLGQ*RMSMLVQQHKRRQEQQWS**RLEQHR 206
+ LR++ ++ Q + Q + Q++ M + ++ L QQ + +Q+ + +Q +
Sbjct: 265 RQLRERQQRHLQQQQQRQQQFQRQQQQQQMQQRQQLQQLQQQQQPQQQHHQQQQQQQQQQ 324
Query: 205 RQ 200
+Q
Sbjct: 325 QQ 326
>SB_7408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 33.9 bits (74), Expect = 0.13
Identities = 30/109 (27%), Positives = 54/109 (49%)
Frame = -1
Query: 562 RQPQVQRKLQRERSP*RQQARSTSQLRV*RGRSMRRWLEHREQSMSRKMVIHERLWTSKK 383
RQ Q QR+ QR+R RQ+ R + R + + R+ HR++ R +R ++
Sbjct: 9 RQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRHRQRQRQR-----QRQRQRQR 63
Query: 382 ILRKQLEKWSWSQPEMQHKRTMVQRRTNMLGQ*RMSMLVQQHKRRQEQQ 236
++Q ++ Q + Q +R QR+ L Q L Q+ ++RQ+Q+
Sbjct: 64 QRQRQRQRQRQRQRQRQRQR---QRQRQRLRQ--RQRLRQRQRQRQQQR 107
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/101 (18%), Positives = 47/101 (46%)
Frame = -1
Query: 448 EHREQSMSRKMVIHERLWTSKKILRKQLEKWSWSQPEMQHKRTMVQRRTNMLGQ*RMSML 269
+ + Q ++ +R ++ ++Q ++ Q + Q +R ++R + R
Sbjct: 6 QRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRHRQRQRQRQRQRQRQRQR 65
Query: 268 VQQHKRRQEQQWS**RLEQHRRQRCGHRERCELSKKKPKTQ 146
+Q +R++++Q R Q +RQR R+R +++ + Q
Sbjct: 66 QRQRQRQRQRQRQRQRQRQRQRQRLRQRQRLRQRQRQRQQQ 106
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/101 (19%), Positives = 48/101 (47%)
Frame = -1
Query: 448 EHREQSMSRKMVIHERLWTSKKILRKQLEKWSWSQPEMQHKRTMVQRRTNMLGQ*RMSML 269
+ + Q ++ +R ++ ++Q ++ Q + Q +R ++R + R
Sbjct: 4 QRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRHRQRQRQRQRQRQRQR 63
Query: 268 VQQHKRRQEQQWS**RLEQHRRQRCGHRERCELSKKKPKTQ 146
+Q +R++++Q R Q +RQR R+R L +++ + Q
Sbjct: 64 QRQRQRQRQRQRQRQRQRQRQRQRQRLRQRQRLRQRQRQRQ 104
>SB_22903| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05)
Length = 885
Score = 33.1 bits (72), Expect = 0.23
Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Frame = -1
Query: 634 RKNHH---GLW*RSKMTQKILQD*WSWRQPQVQRKLQRERSP*RQQARSTSQLRV*RGRS 464
R+ HH W R +++ ++ +W ++ ++ E R Q + R R+
Sbjct: 244 RRAHHLAKKTWKRRLLSKVLI----AWHVYAIEHSVKAEEMRARVQETKKALDRGKLRRA 299
Query: 463 MRRWLEHREQSMSRKMVIHERLWT-SKKILRKQLEKW 356
+R W + + S+ ++ + H +W +K +LRK L+ W
Sbjct: 300 LRAWTLYSQHSVVQRSLHHSSVWHHNKVVLRKALDAW 336
>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 32.7 bits (71), Expect = 0.30
Identities = 21/105 (20%), Positives = 55/105 (52%)
Frame = -1
Query: 460 RRWLEHREQSMSRKMVIHERLWTSKKILRKQLEKWSWSQPEMQHKRTMVQRRTNMLGQ*R 281
R+ ++ +E+ R+++ + + +K+L++Q E+ Q E++H++ + ++ +
Sbjct: 353 RKLIQQQEELKQRELLKQQEVKKQQKLLKQQ-ERLK-QQEEIRHRQLLKEQEELKHRKLL 410
Query: 280 MSMLVQQHKRRQEQQWS**RLEQHRRQRCGHRERCELSKKKPKTQ 146
QHK+ QE++ + E+ ++Q H++ E K + + Q
Sbjct: 411 QEQQKLQHKKLQEEKLKHQKQEEEQQQLQHHKQEEEQLKHQQEQQ 455
>SB_22132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 32.7 bits (71), Expect = 0.30
Identities = 25/123 (20%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Frame = -1
Query: 562 RQPQVQRKLQRERSP*RQQARSTSQLRV*RGRSMRRWLEHREQSMSRKMVIHERLWTSKK 383
+Q Q Q++LQ+++ + Q + Q ++ + + ++ L+ ++Q + ++ ++
Sbjct: 8 QQQQQQQQLQQQQQQQQLQQQQQQQQQLQQQQQQQQLLQQQQQQQQQLQQQQQQQQQLQQ 67
Query: 382 ILRKQ--LEKWSWSQPEMQHKRTMVQRRTNMLGQ*RMSMLVQQHKRRQEQQWS**RLEQH 209
++Q L++ QP ++ ++ R Q R+ QQ R ++QQ RL+Q
Sbjct: 68 QQQQQPRLQQQQQQQPRLKQQQQQQPRLKQQQQQPRLKQQQQQQPRLKQQQQQ-PRLQQQ 126
Query: 208 RRQ 200
++Q
Sbjct: 127 QQQ 129
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/122 (18%), Positives = 62/122 (50%)
Frame = -1
Query: 562 RQPQVQRKLQRERSP*RQQARSTSQLRV*RGRSMRRWLEHREQSMSRKMVIHERLWTSKK 383
+Q Q+Q++ Q+++ +QQ + + + + + + ++Q + ++ RL ++
Sbjct: 21 QQQQLQQQQQQQQQLQQQQQQQQLLQQQQQQQQQLQQQQQQQQQLQQQQQQQPRLQQQQQ 80
Query: 382 ILRKQLEKWSWSQPEMQHKRTMVQRRTNMLGQ*RMSMLVQQHKRRQEQQWS**RLEQHRR 203
+ +L++ QP ++ ++ + + Q R+ QQ + +Q+QQ RL+Q ++
Sbjct: 81 -QQPRLKQQQQQQPRLKQQQQQPRLKQQQQQQPRLKQQQQQPRLQQQQQQP--RLKQQQQ 137
Query: 202 QR 197
Q+
Sbjct: 138 QQ 139
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 32.3 bits (70), Expect = 0.40
Identities = 29/97 (29%), Positives = 41/97 (42%)
Frame = -1
Query: 448 EHREQSMSRKMVIHERLWTSKKILRKQLEKWSWSQPEMQHKRTMVQRRTNMLGQ*RMSML 269
E E M + HE + ++I R+Q E + EMQH+ M+ R ML Q M M
Sbjct: 272 EALEAEMQTAIQEHEAMLMRQEIQRRQEELQRFE--EMQHREEMM--RQEMLQQQEMEMR 327
Query: 268 VQQHKRRQEQQWS**RLEQHRRQRCGHRERCELSKKK 158
+ + R E E RR+ H E KK+
Sbjct: 328 RRDEEMRME--------EMRRREEARHHEEMMFRKKQ 356
>SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59)
Length = 218
Score = 31.9 bits (69), Expect = 0.53
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = +3
Query: 486 SCDVLR--ACCR*GDRSRCSLRCTCGCLQDHQSCSIF-CVILLLYHSPWWFLRRTLRCPR 656
+C V+R ACC + C +RC C+ +C + CV + R +RC
Sbjct: 37 ACCVMRCVACCVMRCVACCVMRCVACCVMHCVACCVMRCVACRVMRC---VACRVMRCVA 93
Query: 657 CIYLCCCA 680
C +CC A
Sbjct: 94 CRVMCCVA 101
>SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1829
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 291 PSIFVRRCTIVRLCCISGCDQDHFS 365
P+ RRC R C +SGC + H S
Sbjct: 788 PNHISRRCKTYRACLVSGCSEKHHS 812
>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
Length = 1421
Score = 29.9 bits (64), Expect = 2.1
Identities = 35/173 (20%), Positives = 72/173 (41%)
Frame = -1
Query: 547 QRKLQRERSP*RQQARSTSQLRV*RGRSMRRWLEHREQSMSRKMVIHERLWTSKKILRKQ 368
+RK + ER R +L V + R ++ E + ++M ++ +K +
Sbjct: 1161 KRKAREERESRRAAEAERRRLEVQKKREEKKKREEEMREKEKEMEQNKIDQEKRKQELME 1220
Query: 367 LEKWSWSQPEMQHKRTMVQRRTNMLGQ*RMSMLVQQHKRRQEQQWS**RLEQHRRQRCGH 188
++ Q ++ +R + + R L + +++ + R+ ++ RL++ R R
Sbjct: 1221 SRRFQEEQDRLEEERRLEEERLRQLEEEDEQRRLEEEQIREAEE-ELRRLQEEREYREQM 1279
Query: 187 RERCELSKKKPKTQLD*WF*LPQQEPR*RGCKPREQLRGDHQRGLRLQRTEQR 29
R+ E ++K Q+E R + EQLR + RLQ E+R
Sbjct: 1280 RKIAEARERKL-----------QEEEEERRRQEEEQLRAIEEERRRLQEEEER 1321
>SB_55427| Best HMM Match : E-MAP-115 (HMM E-Value=0.077)
Length = 599
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Frame = -1
Query: 547 QRKLQRERSP*RQQARSTSQLRV*RGRSMRRWLEHREQSMSRKMVIHERLWTSKKILRKQ 368
+R + R + +A Q + + R + +E REQ + RK +I +RL + R++
Sbjct: 128 ERAEEERRQRAKMEAEQRRQAELEKQRQQQMEME-REQEVLRKQMIQQRLQAQIEAERQR 186
Query: 367 LEKWSWSQ-PEMQHKRTMVQRRTNMLGQ*RMSMLVQQ 260
++W + E+ +++ + Q N L Q R+ L ++
Sbjct: 187 QKEWQKRKVEELLNQKGLEQDIVNNLKQ-RLKKLEEE 222
>SB_32407| Best HMM Match : WSC (HMM E-Value=0.0008)
Length = 832
Score = 29.5 bits (63), Expect = 2.8
Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 1/141 (0%)
Frame = -1
Query: 589 KILQD*WSWRQPQVQRKLQRERSP*RQQARSTSQLRV*RGRSMRRWLEHREQSMSRKMVI 410
K L++ W RQ Q+ R+ + R + + +LR R + M R L R+ +R+ +
Sbjct: 253 KRLREQWGRRQRQLAREKRIRR---ENKRKERERLRRERVKLMER-LRRRKLERARR-IR 307
Query: 409 HERLWTSKKILRKQLEKWSWSQPEMQHKRTMVQRRTNMLGQ*RMSMLVQQHKRRQEQQWS 230
ER+ K++ +L K + KR ++ M + +Q +RR+ Q +
Sbjct: 308 KERM---KRLQMMKLRKILLERKRRAAKRARIRHEKLMRKLRLQQKMEEQRRRRRAHQIA 364
Query: 229 **RLEQHR-RQRCGHRERCEL 170
L+ R RQR G + R +
Sbjct: 365 QRLLKLKRERQRAGAKRRAAI 385
>SB_5147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 460 RRWLEHREQSMSRKMVIHERLWTSKKILRKQLEK 359
R W+ +E + + LW S+KIL+ QLEK
Sbjct: 169 RSWISEQELEDIDEEIRRLELWLSRKILKHQLEK 202
>SB_10193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +3
Query: 471 PRYTRSCDVLRACCR*GDRSRCSLR--CT-CGCLQDHQSCSIFC 593
PR+ +V +AC + ++CS + CT C C++ H C++ C
Sbjct: 784 PRWITIPEVSKAC---SELTKCSCKGVCTRCKCIKAHLECTLLC 824
>SB_54444| Best HMM Match : zf-CCHC (HMM E-Value=0.035)
Length = 671
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 291 PSIFVRRCTIVRLCCISGCDQDHFS 365
P+ RRC + C +SGC + H S
Sbjct: 157 PNHISRRCKTYKACLVSGCSEKHHS 181
>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/77 (19%), Positives = 40/77 (51%)
Frame = -1
Query: 376 RKQLEKWSWSQPEMQHKRTMVQRRTNMLGQ*RMSMLVQQHKRRQEQQWS**RLEQHRRQR 197
++Q ++ QP+ Q ++ Q + Q + QQ +++Q+QQ + +Q ++Q+
Sbjct: 31 QQQQQQQQQQQPQPQQQQQQQQEQEQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQEQQQQ 90
Query: 196 CGHRERCELSKKKPKTQ 146
+++ + +++P Q
Sbjct: 91 QQQQQQQQQQQQQPHQQ 107
>SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)
Length = 603
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/107 (19%), Positives = 50/107 (46%)
Frame = -1
Query: 514 RQQARSTSQLRV*RGRSMRRWLEHREQSMSRKMVIHERLWTSKKILRKQLEKWSWSQPEM 335
++Q R QL+ + +R +H+ Q+ +++ ++ +++ +Q ++ Q ++
Sbjct: 230 QRQQRLQQQLQ----KQHQRPSQHKTQTQNKQSRASKKQQQQQEMKIQQQQQQYIQQQQV 285
Query: 334 QHKRTMVQRRTNMLGQ*RMSMLVQQHKRRQEQQWS**RLEQHRRQRC 194
QH + ++ +L Q QQ + +Q+QQ +Q Q C
Sbjct: 286 QHMQQQRLQQQQLLQQHLQRQQQQQRRHQQQQQQQQLHQQQRLEQSC 332
>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
Length = 2059
Score = 28.7 bits (61), Expect = 4.9
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 10/143 (6%)
Frame = -1
Query: 544 RKLQRERSP*RQQ-ARSTSQLRV*RGRSMRRWLEH---REQSMSRKMVIHERLWTSKKIL 377
RK +RER R++ R + RV R+ R+ + R+Q + ++ + E+ ++
Sbjct: 1680 RKREREREEERRKDVRERMKRRVEEIRAQRQHVAEQKGRDQQIEKEGKVREQQQLQEEGR 1739
Query: 376 RKQLEKWSWSQPEMQHKRTMVQ------RRTNMLGQ*RMSMLVQQHKRRQEQQWS**RLE 215
+++ + Q QH+ Q R+ GQ R S QQ+ ++Q+QQ + +
Sbjct: 1740 QREQQN-EQEQQRQQHELQQQQAEQRQRERSQQQGQPRQS---QQNDQQQQQQQGVIQGQ 1795
Query: 214 QHRRQRCGHRERCELSKKKPKTQ 146
Q RQR ++ +++ TQ
Sbjct: 1796 QRGRQRQHQGQQLHQGQRQQSTQ 1818
>SB_42834| Best HMM Match : C2 (HMM E-Value=3.7e-20)
Length = 808
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1
Query: 271 LVQQHKRRQEQQWS**RLEQHRRQRCGHRE 182
L QQ ++Q+QQ +L+QH++Q+ HR+
Sbjct: 38 LKQQQMQKQQQQHLQQQLQQHQQQQMQHRD 67
>SB_27920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 393 VHNRSWITIFRDILCSRCSSHRRILRPRYTRSCDVL 500
+ R W+T F D+ +S +R L+PR ++ VL
Sbjct: 107 MRKRVWLTFFNDLQSMGQTSFQRCLKPRNAKTDPVL 142
>SB_23686| Best HMM Match : NHL (HMM E-Value=2.7e-07)
Length = 1055
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 540 LRCTCGCLQDHQSCSIFCVILLLYHSPWWFLRRTLRCPRCI 662
L C C C ++ S+ LLL HS W LRR C C+
Sbjct: 421 LDCICHCDICFENKSVCAQCLLLGHSEWHPLRRP--CLECL 459
>SB_16421| Best HMM Match : HD-ZIP_N (HMM E-Value=7.6)
Length = 213
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = -1
Query: 457 RWLEHREQSMSRKMVIHERLWTSKKILRKQLEKWSWSQPEMQHKRTMVQRRTN 299
R EH E+S+SR + H + + + ++W+QP+ + T V RR N
Sbjct: 41 RMSEH-EESLSRSVTKHAKSMSRLRAFTLYNTLYNWNQPKSFYCGTSVIRRFN 92
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,893,899
Number of Sequences: 59808
Number of extensions: 300787
Number of successful extensions: 1227
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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