Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5994
         (712 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              38   3e-04
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    33   0.009
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    31   0.047
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    26   1.3  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            25   3.1  
AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/T...    25   3.1  
AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/T...    25   3.1  
AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein p...    25   3.1  
AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    24   5.4  

>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 37.9 bits (84), Expect = 3e-04
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 4/151 (2%)
 Frame = -1

Query: 469 RSMRRWLEHREQSMSRKMVIHERLWTSKKILRKQLEKWSWSQPEMQHKRTMVQRRTNMLG 290
           R  ++  + REQ   ++    ++    ++  R Q  +W   Q + QH++   Q+      
Sbjct: 223 RQQQQQHQQREQQQQQQQQQQQQQQQQQQQQRNQQREWQQQQQQQQHQQREQQQ------ 276

Query: 289 Q*RMSMLVQQHKRRQEQQWS**RLEQHRRQRCGHRERCEL----SKKKPKTQLD*WF*LP 122
           Q R+    QQH+R+Q+QQ       Q +RQ+   +E+ EL     +++  TQ       P
Sbjct: 277 QQRVQQQNQQHQRQQQQQ-------QQQRQQQQQQEQQELWTTVVRRRQNTQQQQQSNQP 329

Query: 121 QQEPR*RGCKPREQLRGDHQRGLRLQRTEQR 29
           QQ+ +  G     Q+R   Q+  + QR  QR
Sbjct: 330 QQQQQQTGRYQPPQMRQQLQQ-QQQQRQPQR 359


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 33.1 bits (72), Expect = 0.009
 Identities = 38/172 (22%), Positives = 79/172 (45%)
 Frame = -1

Query: 544 RKLQRERSP*RQQARSTSQLRV*RGRSMRRWLEHREQSMSRKMVIHERLWTSKKILRKQL 365
           R  QR R P +QQ +   Q        +R+  + ++Q   R+    ++    ++  R   
Sbjct: 242 RPSQRHRQPQQQQQQQQQQGERYVPPQLRQ--QRQQQQRPRQQQQQQQQQQQQQGERYVP 299

Query: 364 EKWSWSQPEMQHKRTMVQRRTNMLGQ*RMSMLVQQHKRRQEQQWS**RLEQHRRQRCGHR 185
            +    + + QH++   Q++     Q R     QQ +++Q+QQ    R +Q R+Q+   +
Sbjct: 300 PQLRQQRQQQQHQQQQQQQQQQRQQQQRQQQRQQQQRQQQQQQQQQQRQQQQRQQQQQQQ 359

Query: 184 ERCELSKKKPKTQLD*WF*LPQQEPR*RGCKPREQLRGDHQRGLRLQRTEQR 29
           ++ +  +++ + Q        QQ+PR +    R+Q +   Q   RLQ+ +Q+
Sbjct: 360 QQHQQQQQQWQQQQQ-----QQQQPR-QSLPHRKQTQ--LQLSPRLQQQQQQ 403



 Score = 31.1 bits (67), Expect = 0.036
 Identities = 34/169 (20%), Positives = 79/169 (46%), Gaps = 8/169 (4%)
 Frame = -1

Query: 562 RQPQVQRKLQRERS-----P*RQQARSTSQLRV*RGRSMRRWLEHREQSMSRKMV---IH 407
           RQPQ Q++ Q+++      P  +Q R   Q    R R  ++  + ++Q    + V   + 
Sbjct: 248 RQPQQQQQQQQQQGERYVPPQLRQQRQQQQ----RPRQQQQQQQQQQQQQGERYVPPQLR 303

Query: 406 ERLWTSKKILRKQLEKWSWSQPEMQHKRTMVQRRTNMLGQ*RMSMLVQQHKRRQEQQWS* 227
           ++    +   ++Q ++    Q + Q +R   QR+     Q +     Q+ +++Q+QQ   
Sbjct: 304 QQRQQQQHQQQQQQQQQQRQQQQRQQQRQQQQRQQQQQQQQQQRQQQQRQQQQQQQQQHQ 363

Query: 226 *RLEQHRRQRCGHRERCELSKKKPKTQLD*WF*LPQQEPR*RGCKPREQ 80
            + +Q ++Q+   ++  +    + +TQL     L QQ+ + +  + ++Q
Sbjct: 364 QQQQQWQQQQQQQQQPRQSLPHRKQTQLQLSPRLQQQQQQQQQSQQQQQ 412



 Score = 29.1 bits (62), Expect = 0.14
 Identities = 32/164 (19%), Positives = 79/164 (48%), Gaps = 6/164 (3%)
 Frame = -1

Query: 502 RSTSQLRV*RGRSMRRWLEHREQSMSRKMVIHERLWTSKKILRKQLEKWSWSQPEMQHKR 323
           R T++ R  R R   R  + ++Q   ++    ++    ++  ++Q ++    QP+ Q  +
Sbjct: 169 RETARKRQQRLRRRERERQQQQQQQQQQQQQQQQQQQQQRQQQQQCQQQRQQQPQQQQLQ 228

Query: 322 TMVQRRTNMLGQ*RMSMLVQQHKRRQEQQ------WS**RLEQHRRQRCGHRERCELSKK 161
              Q+    + + R S   +Q +++Q+QQ      +   +L Q R+Q+   R++ +  ++
Sbjct: 229 QPQQQLWTTVVRGRPSQRHRQPQQQQQQQQQQGERYVPPQLRQQRQQQQRPRQQQQQQQQ 288

Query: 160 KPKTQLD*WF*LPQQEPR*RGCKPREQLRGDHQRGLRLQRTEQR 29
           + + Q + +   PQ   + +  + ++Q +   Q+  + QR +QR
Sbjct: 289 QQQQQGERYV-PPQLRQQRQQQQHQQQQQQQQQQRQQQQRQQQR 331


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 30.7 bits (66), Expect = 0.047
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = -1

Query: 631 KNHHGLW*RSKMTQKILQD*WSWRQPQV--QRKLQRERSP*RQQARSTSQLRV*RGRSMR 458
           +NH     +S   Q+  Q   S +Q Q+  Q++ QR+R P  QQ  S+SQ RV    + R
Sbjct: 229 QNHQQTAQQSSQQQQQQQQQQSLQQQQLSQQQQQQRQRQPSSQQGDSSSQRRV--RHAGR 286

Query: 457 RW 452
           RW
Sbjct: 287 RW 288


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 354  DHFSSCFLSIFLLVHNRSWITIFRDILCSR 443
            DH    +L +F +   + WI I  D + SR
Sbjct: 1497 DHVGKAYLCLFQVATFKGWIQIMNDAIDSR 1526


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 336  ISGCDQDHFSSCF 374
            ISG  +DH+SSC+
Sbjct: 3110 ISGITEDHYSSCY 3122


>AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/Thr
           phosphatase protein.
          Length = 1977

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 135 HQSSCVFGFFLLNSHRSR 188
           H  SC+FG FL N+ + R
Sbjct: 514 HSHSCLFGTFLCNTVKER 531


>AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/Thr
           phosphatase protein.
          Length = 1978

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 135 HQSSCVFGFFLLNSHRSR 188
           H  SC+FG FL N+ + R
Sbjct: 514 HSHSCLFGTFLCNTVKER 531


>AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein
           protein.
          Length = 527

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = -1

Query: 442 REQSMSRKMVIHERLWTSKKILRKQLEKWSWSQPEMQHKRTM 317
           REQ + R+M   +R    +++  +Q ++W   Q + Q ++ +
Sbjct: 166 REQELLRRMESQQRQEQRQQLEDQQRQRWRQQQQKQQRQQRL 207


>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
            growth factor receptorprotein.
          Length = 1433

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = -1

Query: 343  PEMQHKRTMVQRRTNMLGQ*RMSMLVQQHKRRQEQQWS**RLEQHRRQRCGHRERCELSK 164
            P  QH +  +Q     L   +     Q  +++Q+QQ    + +QH++ +  H  + +LS+
Sbjct: 1281 PTHQHSQIQLQPIQQPLQTLQHQYQQQLQQQQQQQQQQQQQHQQHQQHQLQHHHQPQLSQ 1340


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 518,459
Number of Sequences: 2352
Number of extensions: 9287
Number of successful extensions: 49
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72758970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)