Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5994
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-14|CAB60362.1|  109|Caenorhabditis elegans Hypothetical...    30   1.9  
AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z69885-5|CAA93756.2|  882|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AY064464-1|AAL40874.1|  882|Caenorhabditis elegans minibrain kin...    28   5.7  
AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AL110485-14|CAB60362.1|  109|Caenorhabditis elegans Hypothetical
           protein Y46G5A.20 protein.
          Length = 109

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -2

Query: 138 DGFSYHSRSRDSVAVSQGSSSEETTSADYAYSAQSNDQLG 19
           D F  H+  R S + S  SSS  T+S+  + S++S+DQ+G
Sbjct: 28  DSFPRHAPRRRSSS-SSSSSSSSTSSSSSSNSSESDDQVG 66


>AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical
           protein D1037.1 protein.
          Length = 786

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 23/71 (32%), Positives = 37/71 (52%)
 Frame = -1

Query: 631 KNHHGLW*RSKMTQKILQD*WSWRQPQVQRKLQRERSP*RQQARSTSQLRV*RGRSMRRW 452
           K HH    +SK ++K+ +   +W   +  R   R RS  R Q R  S+ +  + RS  R 
Sbjct: 50  KKHHRH--KSKKSKKVRRRSKTWSSSR-SRSRSRSRSRGRSQERRRSR-KSRKSRSRSR- 104

Query: 451 LEHREQSMSRK 419
           L+HRE+ + +K
Sbjct: 105 LKHREEKIEKK 115


>Z69885-5|CAA93756.2|  882|Caenorhabditis elegans Hypothetical
           protein T04C10.1 protein.
          Length = 882

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
 Frame = -1

Query: 358 WSWSQPEMQHKRTMVQ-RRTNMLGQ*RMSMLVQQ-HKRRQEQQWS**RLEQHRRQRCGHR 185
           + +SQP+ Q ++   Q +RT +  Q + + L QQ  +++ +QQ    +  QH  Q     
Sbjct: 746 YQYSQPQQQQQQQYQQTQRTQLEQQQKQAQLQQQLQQQQMQQQQQQQQQRQHMPQAQSSS 805

Query: 184 ERCELSKKKPKTQ 146
           ++   S+ +P+ Q
Sbjct: 806 QQHLQSRARPRQQ 818


>AY064464-1|AAL40874.1|  882|Caenorhabditis elegans minibrain kinase
           protein.
          Length = 882

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
 Frame = -1

Query: 358 WSWSQPEMQHKRTMVQ-RRTNMLGQ*RMSMLVQQ-HKRRQEQQWS**RLEQHRRQRCGHR 185
           + +SQP+ Q ++   Q +RT +  Q + + L QQ  +++ +QQ    +  QH  Q     
Sbjct: 746 YQYSQPQQQQQQQYQQTQRTQLEQQQKQAQLQQQLQQQQMQQQQQQQQQRQHMPQAQSSS 805

Query: 184 ERCELSKKKPKTQ 146
           ++   S+ +P+ Q
Sbjct: 806 QQHLQSRARPRQQ 818


>AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical
           protein T21D12.11 protein.
          Length = 709

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 220 LEQHRRQRCGHRERCELSKKKP 155
           +E HRR+RC  ++RC  + + P
Sbjct: 320 VECHRRRRCSRKQRCHTTTQPP 341


>Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical
           protein W09G3.6 protein.
          Length = 1125

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 280 MSMLVQQHKRRQEQQWS**RLEQHRRQRCGH 188
           M M+ ++ +R+Q++ W   RL QH ++   H
Sbjct: 686 MGMISEEMRRKQDEMWLDLRLTQHIKKHSSH 716


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,141,752
Number of Sequences: 27780
Number of extensions: 206766
Number of successful extensions: 806
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)