Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5994
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.71 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.93 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.6  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   8.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -1

Query: 289  Q*RMSMLVQQHKRRQEQQWS**RLEQHRRQRCGHRER 179
            Q R + +VQQ +++Q+QQ    + +Q ++Q+  H+ R
Sbjct: 1201 QQRNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQHQAR 1237



 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = -1

Query: 391  SKKILRKQLEKWSWSQPEMQHKRTMVQRRTNMLGQ*RMSMLVQQHKRRQEQQ 236
            SK I+    +K    QP+ Q ++   Q+      Q +      Q +++Q+QQ
Sbjct: 1489 SKLIVDHSSQKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQ 1540



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 340  EMQHKRTMVQRRTNMLGQ*RMSMLVQQHKRRQEQ 239
            E Q    MVQ++     Q +     QQ +++Q+Q
Sbjct: 1200 EQQRNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQ 1233


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 399 NRSWITIFRDILCSRCSSHRRILRPRYTRS 488
           NR +   FR+IL  RCS+   ++R  + +S
Sbjct: 431 NRDFRKPFREILYFRCSNLNHMMREEFYQS 460


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 391 SKKILR-KQLEKWSWSQPEMQHKRTMVQRRTNMLGQ*RMSMLVQQHKRRQEQQ 236
           S+K+L  K  E+    Q + QH++   Q +  +  Q       QQ +++Q+QQ
Sbjct: 403 SEKLLAFKMTEQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQ 455


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -1

Query: 280  MSMLVQQHKRRQEQQWS 230
            M   V +HK++ +Q+W+
Sbjct: 1491 MIYFVVEHKKKNQQEWN 1507


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 448 EHREQSMSRKMVIHERLWTSKKILRKQLEKWSWSQP 341
           +H E+    + VI ER++ S+  L   +  +  S+P
Sbjct: 28  KHAERQEEYRCVICERVYCSRNSLMTHIYTYHKSRP 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,294
Number of Sequences: 438
Number of extensions: 2566
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)