Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5993
         (486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    29   1.8  
Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AC006810-8|AAK84621.1|  364|Caenorhabditis elegans Hypothetical ...    27   7.2  
Z93389-6|CAB07669.2|  300|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    27   9.5  

>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -2

Query: 344 LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI-ES**GRHLKDASPVLDHAICKSYP 168
           +P+  V+  ++ PS +S     + VTT  V+ TTI  S         + V   A   + P
Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTITTSTPPSTTSPTTTVTPVATSSATP 618

Query: 167 DSSKLTTSDKRP 132
             SK TT+ +RP
Sbjct: 619 KPSKRTTT-RRP 629


>Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical
           protein T07D10.2 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 361 GNLRACCLPWMW*PFLRLPLR 299
           GNL +C  PW+W  F R  L+
Sbjct: 330 GNLNSCMNPWLWFHFNRKQLK 350


>Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical
           protein C34C6.3 protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 21  SYSVTWITVVILELIHAIRTLTSDGMS 101
           SY+V+WIT       + IR + SDG++
Sbjct: 54  SYNVSWITPAASNSTYRIRLIDSDGLT 80


>Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical
           protein F17C11.10 protein.
          Length = 1101

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 216 ERCVAGT*PCDLQKLSRFIKINDFG 142
           ER V+ + P DL    RF+K N FG
Sbjct: 440 ERFVSNSSPMDLDATQRFLKYNRFG 464


>AC006810-8|AAK84621.1|  364|Caenorhabditis elegans Hypothetical
           protein Y5H2B.1 protein.
          Length = 364

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 146 KSLILMNLDNFCRSHGQVPATHLSNVCLINFRW*FLRLPWLS 271
           K L + N   +C    +V    ++ +C+I F W F +L +++
Sbjct: 8   KFLTINNFSRYCLKIVKVHIIWITIICIIYFNWRFKKLDFMA 49


>Z93389-6|CAB07669.2|  300|Caenorhabditis elegans Hypothetical
           protein T13F3.5 protein.
          Length = 300

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 390 FVTTSPCREWVICAPAAFLGC 328
           F+ T+ C+ W+IC+   F  C
Sbjct: 277 FLWTNDCKTWLICSHHEFFSC 297


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 341 PSLDVVAVSQAPSP-ESNPDSPLPVT-TMVVAETTI 240
           P+  ++  SQAP P ++ P SP+  T T+   +TT+
Sbjct: 774 PATPMLQASQAPQPLQAPPQSPMETTATVTYTKTTV 809


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,782,076
Number of Sequences: 27780
Number of extensions: 253000
Number of successful extensions: 754
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)