Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5991
(728 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 29 0.51
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 2.1
SPAC977.05c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.1
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 2.1
SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces pom... 27 2.7
SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.7
SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.8
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 8.4
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 25 8.4
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 25 8.4
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 29.5 bits (63), Expect = 0.51
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +1
Query: 259 QPS*LMDLFYLTIGKSAVTLLNLITYILMDTCRLLIYFGSLNLGLYASWR 408
QP L+ L YLT S L + YIL+ T L Y L + ++ WR
Sbjct: 556 QPKILLSLLYLT-DLSLFFLDTYLWYILISTIYSLAYAFCLGISVWTPWR 604
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 569 CMVDPDIGQPVMLSTLFFLLNRFTL 495
C + D+ P +L TL+ LL RF+L
Sbjct: 1697 CCTEDDLNNPHLLFTLYKLLERFSL 1721
>SPAC977.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 204
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 550 MSGSTIQNSKTAQCK--FSKLNL*KDICIQRYESSERIPRW*QPMKIYEVTP 699
+ ST+ N + A C FS L L I + + E +P W QP+++ V P
Sbjct: 148 LMNSTLYNVQVATCTPGFSALLL-DSPTINVFNNEEGMPSWCQPIELIPVCP 198
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 27.5 bits (58), Expect = 2.1
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 492 AESETIEQEKESGQHHGLSD-VRIHHTELKDSTM*IFKIELVKRYLYSKI 638
+ +E QE Q H + D +R +H KD+ M +IEL K YLYS+I
Sbjct: 395 SSNEDKPQEFLKHQIHKVEDYLRKNHKGSKDARM---RIELSKIYLYSEI 441
>SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 203
Score = 27.1 bits (57), Expect = 2.7
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 550 MSGSTIQNSKTAQCK--FSKLNL*KDICIQRYESSERIPRW*QPMKIYEVTP 699
+ ST+ N + A C FS L L I + + E +P W QP+++ V P
Sbjct: 147 LMNSTLYNVQVATCTPGFSALLL-DSPTINVFNNEEGMPSWCQPIELTPVCP 197
>SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 203
Score = 27.1 bits (57), Expect = 2.7
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 550 MSGSTIQNSKTAQCK--FSKLNL*KDICIQRYESSERIPRW*QPMKIYEVTP 699
+ ST+ N + A C FS L L I + + E +P W QP+++ V P
Sbjct: 147 LMNSTLYNVQVATCTPGFSALLL-DSPTINVFNNEEGMPSWCQPIELTPVCP 197
>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 167
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +1
Query: 325 LITYILMDTCRL---LIYFGSLNLGLYASWR 408
+IT+IL+ T + L FG+ LGL SW+
Sbjct: 88 IITFILVQTTLITLDLYVFGATGLGLILSWK 118
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +2
Query: 107 NDTTFRCSRGRMYPTHLSFDCRQRYSMSVACKHQCKRLWLQLFRFESSQV 256
ND CSR + P ++ ++ + K K WL LFR ++ V
Sbjct: 3480 NDLARLCSRKTLAPRPRYSKIVRQLLINTSLKKDTKEYWLNLFRSKNIYV 3529
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 432 EIV*RVSLPPPTAHD--DHDHSAESETIEQEKESGQHHGLSDVRIHHT 569
+I+ +++ TAH ++ HS ++ T K+ G H+ V+ HT
Sbjct: 251 DIIAHLAVAEDTAHPAANNHHSEKAGTQINNKDKGSHNSAKPVQRSHT 298
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 435 IV*RVSLPPPTAHDDHDHSAESETIEQEKESGQHHGLSDVRIH 563
I+ VSL PP ++ ++ + E ET+ + + G + L + H
Sbjct: 113 ILDHVSLIPPKSYYENGYFPEKETLVEARNVGAVYALHRIMSH 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,144,233
Number of Sequences: 5004
Number of extensions: 67688
Number of successful extensions: 184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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