Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5991
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 31 0.94
03_01_0130 - 1007433-1007712,1007739-1007803,1007804-1008001,100... 30 1.6
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 30 1.6
06_01_0974 + 7541771-7542553,7542666-7542795,7543098-7543645,754... 29 3.8
09_04_0193 - 15492102-15492746,15492833-15492946,15493042-154933... 29 5.0
06_01_0156 + 1171717-1174140 28 6.6
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 28 8.7
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 31.1 bits (67), Expect = 0.94
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -1
Query: 473 MCCWRGQTDASHDLPSSLHTLHRQDAYNPRF 381
+C R T SH L SL T+H++D YNP F
Sbjct: 594 LCGGRYDTP-SHPLFRSLQTVHKEDYYNPNF 623
>03_01_0130 -
1007433-1007712,1007739-1007803,1007804-1008001,
1008103-1008273,1008405-1008553,1008780-1008927,
1009015-1009083,1009168-1009416,1009516-1009710,
1009869-1009985,1010205-1011329
Length = 921
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -1
Query: 473 MCCWRGQTDASHDLPSSLHTLHRQDAYNPRF 381
+C R T +H L SL TLH+ D YNP F
Sbjct: 449 LCGGRYDTP-THPLFRSLQTLHKDDYYNPNF 478
>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Frame = -1
Query: 608 FNFENLHCAVFEFCMVDPDIGQPVMLSTLFFLLN------RFTLGRVVVIVMCCWRGQTD 447
F ++C + F + PD+ Q M+ L +L+ R L R +V++ W G ++
Sbjct: 884 FRIRLINC-ISNFIYLFPDVAQD-MIGHLLSMLHDTDYRVRLYLARKIVVLFQIWEGHSE 941
Query: 446 ASHDLPSSL 420
HD+ SS+
Sbjct: 942 LFHDVCSSI 950
>06_01_0974 +
7541771-7542553,7542666-7542795,7543098-7543645,
7544482-7544864,7546670-7546766
Length = 646
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +3
Query: 459 PPTAHDDHDHSAESETIEQEKESG-QHHGLSDVRIHHTELKDSTM*IFKIELVKRYLYSK 635
P DD + AESE + +E +SG + LS +R+ ++++ + + L+++++ S
Sbjct: 436 PYNGDDDSEEIAESEDVHEEFQSGHKEEDLSKIRMQLVQIENQQTSL--LNLLQKFMGSS 493
Query: 636 I*IVRTNPTLVTAYE 680
+R+ T V E
Sbjct: 494 QNGIRSLETRVNGLE 508
>09_04_0193 -
15492102-15492746,15492833-15492946,15493042-15493332,
15493412-15493720,15493815-15494552
Length = 698
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Frame = +1
Query: 286 YLTIGKSAVTLLNLITYILMDTCRLLIYFGSLNLGLY---ASWRCRVWRDDGRSCDASVC 456
+L I S + ++ Y+L + + F ++ GL+ +S+ V + GRS ++ +
Sbjct: 542 FLNILPSPRSFPFIVPYLLFENTMSVTKFNAMVSGLFKLGSSYEWIVTKKSGRSSESDLS 601
Query: 457 PLQQHMTITTTLPRV-KRLSRKKRVD 531
+ T TLPR+ K++S + ++
Sbjct: 602 TAAERDTKDLTLPRLQKQISESELIE 627
>06_01_0156 + 1171717-1174140
Length = 807
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -1
Query: 542 PVMLSTLFFLLNRFTLGRVVVIVMC 468
PV+L++ FFLL + L +VV+V+C
Sbjct: 370 PVVLASPFFLLANYVLLPLVVLVLC 394
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 474 DDHDHSAESETIEQEKESGQHH 539
DD D +AE +E+E+G HH
Sbjct: 834 DDDDEAAEERCTGEEEEAGHHH 855
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,091,706
Number of Sequences: 37544
Number of extensions: 423540
Number of successful extensions: 1176
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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