Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5989
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0138 + 7114949-7115656,7116388-7116435,7116830-7117988,711... 36 0.037
05_03_0090 - 8330283-8330831 31 1.1
08_01_0438 + 3852221-3853207,3853544-3854757,3855258-3855330,385... 30 1.4
07_01_0472 - 3571989-3572042,3572126-3572233,3572251-3572478,357... 29 3.3
08_02_0191 + 14041201-14043894,14044354-14044632 29 4.3
02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852 29 4.3
01_06_0740 + 31603996-31604820,31605080-31605391 29 4.3
12_01_0030 + 262452-263210,263332-263575,263867-264165 28 5.7
03_01_0655 + 4797516-4797624,4797716-4798485,4798988-4799049,479... 28 5.7
06_03_0794 - 24671955-24672362,24672469-24672505,24672804-246728... 28 7.5
03_06_0546 - 34646946-34647289,34647542-34647608 28 7.5
12_02_0998 + 25126114-25126596,25129213-25129339,25129349-251294... 27 9.9
07_01_0989 + 8348706-8348882,8348988-8349028,8350071-8350120,835... 27 9.9
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 27 9.9
05_01_0242 + 1804183-1806096 27 9.9
03_06_0419 - 33789625-33789843,33790884-33791185,33791279-33792248 27 9.9
03_05_0780 + 27646936-27647084,27647168-27647289,27649380-276494... 27 9.9
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081... 27 9.9
01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70... 27 9.9
01_01_0088 + 688792-691441,691629-693013 27 9.9
>02_02_0138 +
7114949-7115656,7116388-7116435,7116830-7117988,
7118336-7118424,7118697-7118732
Length = 679
Score = 35.5 bits (78), Expect = 0.037
Identities = 21/49 (42%), Positives = 23/49 (46%)
Frame = +2
Query: 197 GP*ATSLLAPTSLPTPTSQVALLEPLPTRHPSCRPCRSHRLHHFPSQLI 343
GP T +APT PTP PLP RH C R R H PS L+
Sbjct: 22 GPSLTVTVAPTPPPTPLDPRGY--PLPRRHLVCAAARILRSHASPSPLL 68
>05_03_0090 - 8330283-8330831
Length = 182
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 230 SLPTPTSQVALLEPLPTRH-PSCRPCRSHRLHHFPSQLI*SRRGLP 364
SLPTP L PLP RH P+ CR L H + RR P
Sbjct: 87 SLPTPPLSSRHLYPLPPRHRPAPSLCRGDGLSHRRVSPLQGRRSAP 132
>08_01_0438 +
3852221-3853207,3853544-3854757,3855258-3855330,
3856715-3856843,3857060-3857103,3857186-3857265,
3857342-3857396,3857712-3857919
Length = 929
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 6 KEEVCCTCCVYRSCIILCYFSRR 74
K+ V C+CC++ SC ILC + R
Sbjct: 592 KKTVGCSCCLFESCGILCRHALR 614
>07_01_0472 -
3571989-3572042,3572126-3572233,3572251-3572478,
3573007-3573111,3573310-3573399,3573765-3574256
Length = 358
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = +1
Query: 112 STSYVSSIPLISQ------PIAYSAHFIKKRSPQWPVSYIAPS---SYITPNTYIASGPL 264
STS+ +P ++ P +Y+A+ + K SP+W + + S + T SG L
Sbjct: 226 STSHAKYVPFLAPFIGGALPGSYAAYHLVKHSPEWVMGVVFGSISLGFFAACTGTVSGLL 285
Query: 265 GATTYTTPFVQTVPIASTASL 327
G ++ T + + I + +L
Sbjct: 286 GTSSATFQYSRFAAITTFTAL 306
>08_02_0191 + 14041201-14043894,14044354-14044632
Length = 990
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +3
Query: 333 RSSSDQEEVCPRAGDNLHRTYYLHRCSPRSFLSS-VQLQFARRSSCYILHDTSGVLCS 503
R S D + N Y + R S R SS + L SSC++LH VL S
Sbjct: 713 RFSPDSVSIQGSKESNFRVAYLMCRSSDRQLASSNIALNIQTSSSCHVLHKCRQVLNS 770
>02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852
Length = 764
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = -2
Query: 378 CRQHGGRPLLDQMSCDGK*CSRCDRHGLHEGCRVGSGSKRATCDVGVGSD 229
C+ + G P LD D C R +++G + C GS C G +
Sbjct: 301 CQGYEGNPYLDGGCTDINECLRPEKYGCYGDCTNMLGSHTCVCPPGTSGN 350
>01_06_0740 + 31603996-31604820,31605080-31605391
Length = 378
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = -2
Query: 363 GRPLLDQMSCDGK*CSRCDRHGLHEGCRVGSGSKRATCDVGVGSDVGARSDVAHGP 196
G D M+CDG+ HG H G + DVG GS AR+ A P
Sbjct: 177 GAAFNDAMACDGRFVMDVLLHGHHHGGAQLFRGITSLVDVGGGSGGAARASAAAFP 232
>12_01_0030 + 262452-263210,263332-263575,263867-264165
Length = 433
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -2
Query: 417 WESSGVSSRYGVSCRQHGGRPLLDQMSCDGK*CSRCD--RHGLHEGCRVGSGS 265
W+S S R+ S + P+ + +C G+ CS CD R LH C GS S
Sbjct: 308 WDSQ--SGRFNKSNSKPICSPVQNYNACFGRLCSFCDEPRTILHPPCATGSHS 358
>03_01_0655 +
4797516-4797624,4797716-4798485,4798988-4799049,
4799267-4799336,4799971-4800058,4801070-4801227,
4801316-4801459,4801561-4801689,4801797-4801964
Length = 565
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = -2
Query: 366 GGRPLLDQMSCDGK*CSRCDRHGLHEGCRVGSGSKRATCDVGVGSDVGARSDVAHG 199
GG PL+ + + C++ + G VGS ++ A+ +VGV S+ G+ +D +G
Sbjct: 137 GGSPLMLESLPETSDTRGCEQEVM-PGVVVGSSNRDASSEVGVESERGSDADGRNG 191
>06_03_0794 -
24671955-24672362,24672469-24672505,24672804-24672858,
24674044-24674167,24674670-24674903
Length = 285
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 187 SPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFV 294
+PQ + A TP + SGP G TTYT FV
Sbjct: 2 TPQRSPAAAAAGGGGTPALHYLSGPYGDTTYTKVFV 37
>03_06_0546 - 34646946-34647289,34647542-34647608
Length = 136
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 3 IKEEVCCTCCVYRSCIILCYFSRRSNHL 86
+ E+ CC CCV+ C + C + HL
Sbjct: 82 LPEDPCCDCCVHALC-LQCALCQEYRHL 108
>12_02_0998 +
25126114-25126596,25129213-25129339,25129349-25129459,
25130122-25130270,25130356-25130643,25130753-25130941,
25131445-25131619,25132219-25132316
Length = 539
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 169 HFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTP 288
+F+ + SPQ P AP + Y + P G T+Y +P
Sbjct: 455 NFMAEASPQGPPQAPAPPAQPVDTGYSSYPPYGGTSYGSP 494
>07_01_0989 +
8348706-8348882,8348988-8349028,8350071-8350120,
8350502-8350646,8351570-8351626,8352141-8352261,
8352436-8352945,8353242-8353289
Length = 382
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 191 HNGP*ATSLLAPTSLPTPTSQVALLEPLPTRHPS 292
H+ P PT+ P+P LL+P P +PS
Sbjct: 307 HSAPLLQPFPLPTASPSPPYGTPLLQPFPPPNPS 340
>06_01_1032 +
8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 279 HDTLRADRADRIDCITSRRSSSDQEEVCPRAGDNLH 386
HD+L++D TS++SSS ++ V P+A +LH
Sbjct: 186 HDSLKSDEK------TSKKSSSKRKRVDPKAAGDLH 215
>05_01_0242 + 1804183-1806096
Length = 637
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 251 QVALLEPLPTRHPSCRPCRSHR 316
++ LL PLP RH S P SHR
Sbjct: 7 RLRLLLPLPRRHLSTAPATSHR 28
>03_06_0419 - 33789625-33789843,33790884-33791185,33791279-33792248
Length = 496
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +2
Query: 200 P*ATSLLAPTSLPTPTSQVALLEPLPTRHPSCRPCRSHRLHHFPSQLI*SRRGLPP 367
P + ++++ +S P Q +P PT P +++ H P+ + RR PP
Sbjct: 60 PASPAMISSSSSSLPPQQQRTWQPQPTTFSQANPGHAYQQDHLPA--VAGRRFFPP 113
>03_05_0780 +
27646936-27647084,27647168-27647289,27649380-27649458,
27650346-27650427,27650483-27650600,27650695-27651050,
27651404-27652222,27652846-27653265,27653426-27653437
Length = 718
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 293 CRPCRSHRLHHFPSQLI*SRRGLPP 367
CRPC SHR + R GLPP
Sbjct: 379 CRPCLSHRTGLLHRTRLSHRSGLPP 403
>01_06_0556 +
30207124-30207581,30207692-30207901,30208016-30208100,
30208517-30208676,30208768-30208844,30208985-30209032,
30209504-30209594,30209703-30210004,30210214-30210495,
30210695-30211011,30211113-30211273,30211556-30211665,
30211752-30211902,30212438-30212578,30212688-30212857,
30213485-30213817,30213981-30214271,30214356-30214439,
30214620-30214753,30214946-30215173,30215273-30215444,
30215621-30215875,30215963-30216232
Length = 1509
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 420 SFLSSVQLQFARRSSCYILHDTSGVL 497
S L V L FA+R + +IL D SG++
Sbjct: 194 SLLGLVGLNFAKRKALHILKDVSGIV 219
>01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-708105,
708462-708702,708783-708857,708932-709017,709451-709523,
709637-709961,710092-711750,711938-713322
Length = 1788
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +3
Query: 258 PSW--SHYLH-DTLRADRADRIDCIT 326
PSW S+ +H DTL D +R+DCI+
Sbjct: 1311 PSWLGSNIIHLDTLHLDGLERLDCIS 1336
>01_01_0088 + 688792-691441,691629-693013
Length = 1344
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +3
Query: 258 PSW--SHYLH-DTLRADRADRIDCIT 326
PSW S+ +H DTL D +R+DCI+
Sbjct: 867 PSWLGSNIIHLDTLHLDGLERLDCIS 892
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,264,675
Number of Sequences: 37544
Number of extensions: 330797
Number of successful extensions: 1116
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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