Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5988
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0159 + 15213752-15214028,15214158-15214399                       30   1.7  
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083...    30   2.2  
03_02_0665 - 10268959-10269148,10269344-10269936,10270572-102710...    29   5.2  
04_04_1146 + 31249488-31249722,31250145-31250236,31251158-312512...    28   9.1  

>09_04_0159 + 15213752-15214028,15214158-15214399
          Length = 172

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -1

Query: 436 RRYGDVVGTQRALAAVHACREDDGARTSPASGAAAGIAKR 317
           RR+GD++  +R LAA   C  DDG+  +   G A  +A+R
Sbjct: 134 RRHGDLLRWRRTLAAQRPC-ADDGSVGTCCGGPAWALARR 172


>05_07_0354 -
           29507068-29507170,29507406-29507431,29508264-29508301,
           29508722-29508825,29509005-29509024,29509251-29509299,
           29510319-29510406,29510463-29510562,29510660-29510737,
           29512688-29512804,29513718-29513821,29514497-29514569,
           29514904-29514981,29515091-29515215,29515278-29515341,
           29515439-29515597,29515950-29516048,29516496-29516624,
           29517010-29517075,29517160-29517304,29517379-29517500,
           29517683-29517838,29517918-29518029,29518891-29519036,
           29519148-29519252,29519391-29519540,29519703-29519776,
           29519902-29520055,29520142-29520408
          Length = 1016

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 410 RSNDITIPPMDVELDLCFSLQYPHFVKRDGNRLQIML 520
           R +D  +P   VE++LC  + Y H   R G RL +++
Sbjct: 30  RGDDDYVPGNIVEIELCNFMTYDHLTCRPGPRLNLVV 66


>03_02_0665 - 10268959-10269148,10269344-10269936,10270572-10271004,
            10271172-10272040,10272121-10272915,10273612-10273829,
            10274931-10275230,10276834-10277161
          Length = 1241

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -1

Query: 511  LQSVTVPFHEMRVLKRKAEVQFDVHRRYGDVVGTQRALAAVHACREDDG 365
            L +   P H+ RV K+  +V  +V +   DV   +R L  V AC +DDG
Sbjct: 1120 LYNTMFPRHKDRVNKKLVDVAKEVAKV--DVPAYRRHLDVVVACEDDDG 1166


>04_04_1146 +
           31249488-31249722,31250145-31250236,31251158-31251209,
           31251377-31251477,31251587-31252020,31252453-31252507,
           31252614-31252667,31252774-31253190
          Length = 479

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 561 IKLWLKVSSEWIKFLQRSMDMELELIGVGG 650
           I+LWL+++ E +  +  ++D  L + G+GG
Sbjct: 11  IELWLRIAKEQVPLVDPTLDPVLLVPGIGG 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,879,651
Number of Sequences: 37544
Number of extensions: 438061
Number of successful extensions: 1403
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)