Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5988
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41746-7|AAK71873.1|  803|Caenorhabditis elegans Hypothetical pr...    71   9e-13
AF077542-10|AAC26297.1|  177|Caenorhabditis elegans Hypothetical...    30   1.5  
Z81553-5|CAB04494.1|  382|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z68215-14|CAL49436.1|  394|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z68215-13|CAL49435.1|  382|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z68215-12|CAA92455.2|  368|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z68215-10|CAC42269.1|  399|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z68215-9|CAC42270.1|  384|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AM231685-1|CAJ77754.1|  375|Caenorhabditis elegans GDP-mannose 4...    29   3.5  
AM231684-1|CAJ77753.1|  384|Caenorhabditis elegans GDP-mannose 4...    29   3.5  
AM231683-1|CAJ77752.1|  399|Caenorhabditis elegans GDP-mannose 4...    29   3.5  
Z81592-3|CAB04729.2|  389|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>U41746-7|AAK71873.1|  803|Caenorhabditis elegans Hypothetical
           protein T18H9.7a protein.
          Length = 803

 Score = 70.9 bits (166), Expect = 9e-13
 Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 4/136 (2%)
 Frame = +2

Query: 206 SKPVPMKLFAAWEVDRTPSNCIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR 385
           S  + M+L+A W+VDR   + +P                                     
Sbjct: 7   SSSMAMRLYATWDVDRATPSTVPRIFNVSINRILLDCVFPEVNSIIVTAKLP-------- 58

Query: 386 MHSSKRTLRSNDITIPP----MDVELDLCFSLQYPHFVKRDGNRLQIMLQRRKKYKNRTI 553
           +    R LRSN+I + P    +D++ D+ F +QYPHF+KR  N LQI++QRRKK+KNR  
Sbjct: 59  LSKRNRYLRSNEIKVTPNHGRIDLDCDISFCIQYPHFLKRKSNVLQILIQRRKKFKNRLP 118

Query: 554 LGYKTLAEGVIRMDQV 601
            G + LA G I +  +
Sbjct: 119 GGLRDLAVGNINLTYI 134


>AF077542-10|AAC26297.1|  177|Caenorhabditis elegans Hypothetical
           protein Y57G7A.2 protein.
          Length = 177

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/86 (17%), Positives = 37/86 (43%)
 Frame = +2

Query: 491 RDGNRLQIMLQRRKKYKNRTILGYKTLAEGVIRMDQVSPTFDGYGIRTDRGRWGKVGAAA 670
           R G + +   + +   KN+ +L      +  +   ++    +   +R +RGR+  +GA  
Sbjct: 92  RKGGKNKEEAREKNHQKNKALLEMLNQVDPAVIDAEIEEQKEKQRLRKNRGRYDPIGAHG 151

Query: 671 GQPVSEAFDHRLGFRRQSDHDTKNNN 748
            Q  +    + + + R   ++  NN+
Sbjct: 152 AQQGTRGVQNEVQYHRNFQNNNNNNS 177


>Z81553-5|CAB04494.1|  382|Caenorhabditis elegans Hypothetical
           protein F56H6.5 protein.
          Length = 382

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 424 DVVGTQRALAAVHACREDDGARTSPAS 344
           D VGT R L A+HACR  +  R   AS
Sbjct: 139 DAVGTLRLLDAIHACRLTEKVRFYQAS 165


>Z68215-14|CAL49436.1|  394|Caenorhabditis elegans Hypothetical
           protein C53B4.7e protein.
          Length = 394

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 424 DVVGTQRALAAVHACREDDGARTSPAS 344
           D VGT R L A+HACR  +  R   AS
Sbjct: 151 DAVGTLRLLDAIHACRLTEKVRFYQAS 177


>Z68215-13|CAL49435.1|  382|Caenorhabditis elegans Hypothetical
           protein C53B4.7d protein.
          Length = 382

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 424 DVVGTQRALAAVHACREDDGARTSPAS 344
           D VGT R L A+HACR  +  R   AS
Sbjct: 139 DAVGTLRLLDAIHACRLTEKVRFYQAS 165


>Z68215-12|CAA92455.2|  368|Caenorhabditis elegans Hypothetical
           protein C53B4.7c protein.
          Length = 368

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 424 DVVGTQRALAAVHACREDDGARTSPAS 344
           D VGT R L A+HACR  +  R   AS
Sbjct: 125 DAVGTLRLLDAIHACRLTEKVRFYQAS 151


>Z68215-10|CAC42269.1|  399|Caenorhabditis elegans Hypothetical
           protein C53B4.7b protein.
          Length = 399

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 424 DVVGTQRALAAVHACREDDGARTSPAS 344
           D VGT R L A+HACR  +  R   AS
Sbjct: 156 DAVGTLRLLDAIHACRLTEKVRFYQAS 182


>Z68215-9|CAC42270.1|  384|Caenorhabditis elegans Hypothetical
           protein C53B4.7a protein.
          Length = 384

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 424 DVVGTQRALAAVHACREDDGARTSPAS 344
           D VGT R L A+HACR  +  R   AS
Sbjct: 141 DAVGTLRLLDAIHACRLTEKVRFYQAS 167


>AM231685-1|CAJ77754.1|  375|Caenorhabditis elegans GDP-mannose
           4,6-dehydratase protein.
          Length = 375

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 424 DVVGTQRALAAVHACREDDGARTSPAS 344
           D VGT R L A+HACR  +  R   AS
Sbjct: 132 DAVGTLRLLDAIHACRLTEKVRFYQAS 158


>AM231684-1|CAJ77753.1|  384|Caenorhabditis elegans GDP-mannose
           4,6-dehydratase protein.
          Length = 384

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 424 DVVGTQRALAAVHACREDDGARTSPAS 344
           D VGT R L A+HACR  +  R   AS
Sbjct: 141 DAVGTLRLLDAIHACRLTEKVRFYQAS 167


>AM231683-1|CAJ77752.1|  399|Caenorhabditis elegans GDP-mannose
           4,6-dehydratase protein.
          Length = 399

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 424 DVVGTQRALAAVHACREDDGARTSPAS 344
           D VGT R L A+HACR  +  R   AS
Sbjct: 156 DAVGTLRLLDAIHACRLTEKVRFYQAS 182


>Z81592-3|CAB04729.2|  389|Caenorhabditis elegans Hypothetical
           protein T16G1.3 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 163 NSTAHVFTAQHNRRSEWTYLYINKK*HQIHSYLSSVMPMQRTTILVN 23
           N T   F  ++   +   +LYIN K +++HS L S+   Q  ++ +N
Sbjct: 117 NLTKGFFAMEYVDNAITRHLYINLKSYELHSILKSLAVFQAESLKLN 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,468,285
Number of Sequences: 27780
Number of extensions: 359308
Number of successful extensions: 998
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)