Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5986
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   2.3  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   3.1  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    26   7.1  

>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 268

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 569 LPAFSRTTTSKSLGYSLAGLL 507
           L A SR+TTS SLG+ + G+L
Sbjct: 119 LDAVSRSTTSGSLGFRITGIL 139


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 51  KEESYVHSRAIAYVVVKTCVYSREVALQMNYIEFNL 158
           KEE+   S++    ++  C+  R   LQ  YI FN+
Sbjct: 764 KEETMATSQSPIRTLLSACINLRPFLLQEQYISFNM 799


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 676 TK*SKYLLTNLLLHGQFIW 732
           +K SKY LTNL  H  F+W
Sbjct: 392 SKDSKYALTNLEPHTTFLW 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,976
Number of Sequences: 5004
Number of extensions: 58509
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)