Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5986
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0884 - 28487013-28487271,28487355-28487516,28487594-284878...    30   2.4  
12_02_0102 - 13622123-13622500,13622838-13623107,13623196-13623555     29   4.2  

>03_05_0884 - 28487013-28487271,28487355-28487516,28487594-28487802,
            28488490-28488630,28488876-28489071,28489207-28489379,
            28490095-28490142,28490301-28490378,28490526-28490792,
            28491689-28491842,28491928-28492064,28492459-28492536,
            28493039-28493216,28493589-28493803,28494063-28494422,
            28494497-28494973,28495561-28495665,28495838-28496020,
            28496105-28496263,28496937-28497154,28497737-28497905,
            28498262-28498568,28498699-28498826,28498902-28499060,
            28499194-28499364,28500258-28500376,28500604-28500853,
            28501007-28501759
          Length = 1950

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 560  MQEEKHWKPCKITQQFDGSQPNVKSH 637
            +Q+  HW PC +TQ  +   P  K H
Sbjct: 1469 LQQLPHWAPCSVTQALEFLTPPYKGH 1494


>12_02_0102 - 13622123-13622500,13622838-13623107,13623196-13623555
          Length = 335

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 585 GFQCFSSCIF*DNNIKVTRIFFGWIVAFNNLPVCYL*TKYWVV 457
           GF     C +  NNI    +F  WI  +  LP+C L  KY V+
Sbjct: 290 GFNPEIKCDYITNNI--VEVFNNWIKDYKALPICDLADKYRVL 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,578,028
Number of Sequences: 37544
Number of extensions: 317990
Number of successful extensions: 586
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)