Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5986
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            24   1.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   4.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.7  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   7.5  

>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 206 EHNGSVLWSWY 174
           +HNGS+ WS Y
Sbjct: 33  DHNGSIYWSMY 43


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 688 KYLLTNLLLHGQFIWLKGIVLAYHYSK 768
           KYLL  ++L G  + +  ++L  HY K
Sbjct: 300 KYLLFTMILVGLSVVITIVILNVHYRK 326


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 188 VHFHYALNRRSPIKIFDNP 244
           +H H  L ++SP  +++NP
Sbjct: 76  LHHHQVLYQQSPYLMYENP 94


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 688 KYLLTNLLLHGQFIWLKGIVLAYHY 762
           KYLL  ++L    IW+   VL  H+
Sbjct: 314 KYLLFTMILVTLSIWITVCVLNVHF 338


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 557 KMQEEKHWKPCKITQQFDGSQPNVKSHG 640
           KMQEEK ++P +I Q  + S+   K+ G
Sbjct: 265 KMQEEKIFEPHRIPQLQEVSEFLKKNTG 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,304
Number of Sequences: 438
Number of extensions: 3933
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)