Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5984
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    40   0.002
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    39   0.003
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    38   0.007
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    36   0.030
AF038613-2|AAB92049.1|  477|Caenorhabditis elegans Cytochrome p4...    28   6.0  
AF025458-1|AAB70977.2|  384|Caenorhabditis elegans Hypothetical ...    28   7.9  

>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
 Frame = -1

Query: 495 STVVQMYSLLLMFNRNTISN--KMFDQPIPWAPKVKYLGVTLDSRMTFRPHIKTVRDRAA 322
           STV    + LL   +       K+ + PI  +   + LG+  DS++TF+PHIK +    +
Sbjct: 161 STVAHSKTCLLHLGKKNPKTVYKINNLPISPSNIARDLGILTDSKLTFKPHIKKI---VS 217

Query: 321 FILGRLYPMICRRSKMSLRNKVTLYKTCIRPVMTYASVVFA 199
             L R   ++     +       L+KT I P++ Y S V++
Sbjct: 218 LALLRCKQLLKSFKSLCPEFYCNLFKTYILPLIEYGSAVYS 258


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 25/93 (26%), Positives = 43/93 (46%)
 Frame = -1

Query: 420 PIPWAPKVKYLGVTLDSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKT 241
           PI      + LG  +  ++ F  H K   + A F L  ++      +K  +   + LYKT
Sbjct: 140 PIERKTITRDLGFLISEKLDFSEHWKKSINLAKFQLANIFNQYSTSNKKLM---ILLYKT 196

Query: 240 CIRPVMTYASVVFAHAARIHLKSFQIIQSRFCR 142
            IRP + Y +VV +   +   K+ + +Q+ F R
Sbjct: 197 FIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 24/93 (25%), Positives = 43/93 (46%)
 Frame = -1

Query: 420 PIPWAPKVKYLGVTLDSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKT 241
           PI      + LG  +  ++ F  H +   + A F L  ++      +K  +   + LYKT
Sbjct: 170 PIERKAITRDLGFLISEKLDFSDHWRKCINLAKFQLANMFNKYSTSNKKLM---ILLYKT 226

Query: 240 CIRPVMTYASVVFAHAARIHLKSFQIIQSRFCR 142
            IRP + Y +VV +   +   K+ + +Q+ F R
Sbjct: 227 FIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
 Frame = -1

Query: 474  SLLLMFNRNTISNKMFDQ-PIPWAPKVKYLGVTLDSRMTFRPHIKTVRDRAAFILGRLYP 298
            +LL +  RN   +   D  PI  +  V+ LG+  D ++ F  HI  V   +   + R   
Sbjct: 950  ALLALGTRNKNQSYSVDGVPITPSSTVRDLGLITDCKLKFEHHIVKV---SCLAMLRSKQ 1006

Query: 297  MICRRSKMSLRNKVTLYKTCIRPVMTYASVVFA 199
            ++   S  S +    LYKT + P+M Y S V+A
Sbjct: 1007 ILKAFSSNSPKFYAHLYKTYVAPIMNYCSEVYA 1039


>AF038613-2|AAB92049.1|  477|Caenorhabditis elegans Cytochrome p450
           family protein 25A5 protein.
          Length = 477

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 572 IVRISNFLLRPAPNLIALSQYKQSLIQLLY 483
           I   SNF  R  PN+  ++Q  QSL+Q  Y
Sbjct: 77  IQNFSNFSDRMTPNIFGMNQLNQSLLQNTY 106


>AF025458-1|AAB70977.2|  384|Caenorhabditis elegans Hypothetical
           protein C01B12.4 protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 500 LIQLLYKCIAYY*CLIVTPYLIRCSTSPYR 411
           L+ LL  CIA+Y C ++ P L R   +PYR
Sbjct: 203 LMALLSMCIAFYGCYVMVP-LGREKHAPYR 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,661,314
Number of Sequences: 27780
Number of extensions: 314243
Number of successful extensions: 836
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)