Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5979
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar...    84   2e-17
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    27   2.1  
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    27   2.8  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    27   3.7  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    27   3.7  
SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyce...    25   8.6  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   8.6  

>SPAC2F7.05c |||translation initiation factor eIF5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 38/59 (64%), Positives = 46/59 (77%)
 Frame = +1

Query: 520 RFEGKGNGIKTVIVNMPEVAKALGRPATYPTKYFGCELGAQTQFDFKNERFIVNGSHDS 696
           + EGKGNGIKTVI NM ++AKALGRP  Y TK+FG ELGAQT      +R+IVNG+HD+
Sbjct: 25  KIEGKGNGIKTVIPNMSDIAKALGRPPLYVTKFFGFELGAQTTIIADMDRYIVNGAHDA 83



 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 13/30 (43%), Positives = 24/30 (80%)
 Frame = +3

Query: 447 MGSLNVNRNVSDAFYRYKMPRICAKVRREG 536
           M ++N+ R+V D+FYRY+MP++ +K+  +G
Sbjct: 1   MATINIRRDVKDSFYRYRMPKLQSKIEGKG 30



 Score = 29.1 bits (62), Expect = 0.70
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +2

Query: 701 KLQDLLDGFIRKFVL 745
           KLQDLLD FIR+FVL
Sbjct: 85  KLQDLLDVFIRRFVL 99


>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +1

Query: 541 GIKTVIVNMPEVAKALGRPATYPTKYFGCELGAQTQFDFKNERFIVNG 684
           G KT+  N+ +++K + R   +  ++   ELG     D  + R I+ G
Sbjct: 206 GKKTIFANISDISKRMHRSLDHVIQFLFAELGTSGSVD-GSSRLIIKG 252


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 10/35 (28%)
 Frame = +1

Query: 535 GNGIKTVIVNMPEVAKA----------LGRPATYP 609
           GN +KT IV MP V K+          LG PA YP
Sbjct: 18  GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYP 52


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
 Frame = +1

Query: 7   SVRRARFYSLQLLQKPGSTIHQVAELSSIW-ALPFYMTLARYSETSVLCAESSRCVATGG 183
           S R   F   ++   P   +H+V  LSS W  L    TL       VL  E+S     G 
Sbjct: 67  SERLQEFLDDEVAYHPEENVHKVVGLSSAWLELDSEDTLIADRSEEVLLKEASYASYCGL 126

Query: 184 TAASRRG-CMTLNTTRYTVRRTSKFCSNRHRKLL 282
           ++    G    +N  RY    +S   S  + K L
Sbjct: 127 SSIILNGPTSPMNVMRYARAVSSALNSTMNLKFL 160


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 82  LSSIWALPF-YMTLARYSETSVLCAESSRCV 171
           +  IW++   YMTL+  S TS +C E  RC+
Sbjct: 340 IGRIWSIKLTYMTLSGAS-TSAVCEEKDRCL 369


>SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +1

Query: 544 IKTVIVNMPEVAKALGRPATYPTKYFGCELGAQ 642
           + +++VN PE+A+ +GR   +  KY G E G++
Sbjct: 125 MSSLVVNDPELAQKVGRLRQFFEKY-GLEAGSK 156


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 601  TYPTKYFGCELGAQTQFDFKNERFIVNGSHDS 696
            T  T  F  +L     +    ERF++N SHDS
Sbjct: 1287 TLSTFGFNTKLSEYVNWRIALERFVINESHDS 1318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,105,494
Number of Sequences: 5004
Number of extensions: 65128
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)